species-delimitation

There are 0 repository under species-delimitation topic.

vinuesa / get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
phylogenomics population-genetics phylogenomics-pipeline species-trees markers genomics pipeline phylogenetics phylogenetic-trees codon-alignment maximum-likelihood orthologues species-delimitation microbiology core-genome perl r bash clock-hypothesis recombination
Language:Perl 46
Changwanseo / FunID
Fungal Identification Pipeline
fungi phylogenetic-tree species-delimitation species-identification taxonomy multigene
Language:Python 5
boopsboops / spider
Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)
dna-barcode species-delimitation r edna species-identity evolution
Language:R 2
HiddenDiversity
parsons463 / HiddenDiversity
This repository contains data and code from the manuscript, "Analysis of biodiversity data suggests that species are hidden in predictable places".
biodiversity-informatics conservation cryptic-species dna-barcoding machine-learning mammals species-delimitation taxonomy
Language:R 2
btmartin721 / R_scripts
Scripts written in R
hzar compd dtests hybrid-detective newhybrids parallelnewhybrid genepop r bfd bayes-factors marginal-likelihood species-delimitation
Language:R 1
clarkevansteenderen / spede_sampler_R
An R Shiny App that assesses sampling effects (e.g. sample size and BEAST parameters) on GMYC output for species delimitation.
accumulation-curves cryptic-species gmyc r-shiny-apps sample-size species-delimitation systematics taxonomy ultrametric-phylogeny
Language:R 1
scrameri / smtools
Molecular Sequence Manipulation Tools
chloroplast chloroplast-genome species-delimitation r-for-data-science bash-script
Language:R 1
gsgarlata / Eliurus-Phylogenomics
This repository includes scripts and data used in Sgarlata et al., 2023 entitled "The Genomic Diversity of the Eliurus genus in northern Madagascar with a Putative New Species".
phylogenomics-pipeline rad-seq species-delimitation spatial-phylogenomics
Language:PostScript 0
justincbagley / GaussClust
Clustering using Gaussian mixture modeling for species delimitation and classification
gaussian-mixture-models gmm clustering-algorithm species-delimitation sensitivity-analysis prior belief
Language:Shell 0
boopsboops / pseudolithoxus-novsp
Biogeography and species delimitation of the rheophilic suckermouth-catfish genus _Pseudolithoxus_ (Siluriformes: Loricariidae), with the description of a new species from the Brazilian Amazon
species-delimitation biogeography phylogenetics ichthyology catfish neotropics
Language:TeX
JuliianaLeshchenko / Sarcoscypha
created to work on with data for the article
species-delimitation phylogenetics species-identification
Language:R