environmental-dna

There are 0 repository under environmental-dna topic.

• enormandeau / barque

  eDNA metabarcoding pipeline

  environmental-dnametabarcodinganalysis-pipelinegenomics
  Language:Python 30
• medna-metadata

  Maine-eDNA / medna-metadata

  An open-source data management system for tracking environmental DNA samples and metadata

  environmental-dnametadatastandards-basedweb-application
  Language:Python 11
• facepai

  emmawahl / facepai

  Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.

  bioinformaticsbioinformatics-pipelinebioinformatics-scriptsbiologymolecular-biologydna-sequencesdna-barcodeenvironmental-dna
  Language:Shell 6

• NationalGenomicsCenter / eDNAssay

  This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.

  environmental-dnabase-pair-mismatchespredictive-modelingmachine-learningrandom-forestassay-specificityassay-generalityqpcr
  Language:R 4

• pierre-veron / eDNA-trawl

  Comparison between eDNA and trawling for fish biodiversity metrics

  biodiversity-indicatorsecologyenvironmental-dnamarine-ecology
  Language:R 4

• Talitrus / bocas_eDNA

  Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

  bioinformaticsecologyenvironmental-dnametabarcoding
  Language:R 3

• billzt / MultiBarcodePipeline

  Calculate optimal combination of eDNA barcodes based on amplicon sequences

  environmental-dna
  Language:Python 2

• AGalanis97 / Direct-shotgun-metagenomics-pub

  metagenomicskraken2shotgun-metagenomicsmolecular-ecologyhoneyhoneybeeenvironmental-dna
  Language:R 0