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Matthew Orton (m-orton)

m-orton

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Company:Biodiversity Institute of Ontario

Location:Guelph

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Matthew Orton's repositories

Evolutionary-Rates-Analysis-Pipeline

The purpose of this repository is to develop software pipelines in R that can perform large scale phylogenetics comparisons of various taxa found on the Barcode of Life Database (BOLD) API.

Language:RLicense:GPL-3.0Stargazers:7Issues:6Issues:41

ssPRIMER

ssPRIMER (or species-specific PRIMER) is a shiny based software tool that can be used to design species-specific primer sets and Taqman probes for qPCR assays.

Language:RLicense:GPL-3.0Stargazers:5Issues:0Issues:0

Arctic-Biogeographical-Analysis-Pipeline

Arctic Community Similarity using DNA Barcoding Data

Language:RStargazers:3Issues:4Issues:1

PlotlyMapTutorial

Map plotting with Plotly using public BOLD API COI data

Language:RLicense:GPL-3.0Stargazers:1Issues:2Issues:0

Animal-Barcode-Classifier-Benchmarking

Taxonomic Classification Methods for Animal Barcode Datasets: Benchmarking for Accuracy and Speed

Language:RLicense:GPL-3.0Stargazers:0Issues:1Issues:0

Java-Scripts

This will showcase some of the Java scripts (as in .java) scripts I have written

Language:JavaLicense:GPL-3.0Stargazers:0Issues:2Issues:0

Overlaying-Geographical-Points-on-a-Choropleth-Map-using-Plotly

A simple script using plotly that allows you to discretely color individual states (usa) and then overlay them with geographical coordinate data.

Language:RLicense:GPL-3.0Stargazers:0Issues:2Issues:0

Perl-Scripts

This will showcase some of the perl scripts I have written

Language:PerlLicense:GPL-3.0Stargazers:0Issues:2Issues:0