biodiversity-informatics
There are 3 repositories under biodiversity-informatics topic.
- Language:Python 196
- pyinaturalist
pyinat / pyinaturalist
Python client for iNaturalist
Language:Python 124 - Language:Java 122
- taxonworks
SpeciesFileGroup / taxonworks
Workbench for biodiversity informatics.
Language:Ruby 82 - Language:HTML 81
- Language:ColdFusion 56
- Language:Shell 49
- elapid
earth-chris / elapid
Species distribution modeling tools, including a python implementation of Maxent
Language:Python 45 BelgianBiodiversityPlatform / python-dwca-reader
🐍 A Python package to read Darwin Core Archive (DwC-A) files.
Language:Python 43gnames / gnfinder
GNfinder finds scientific names in UTF8 texts, PDF files, MS Word/Excel documents, URLs etc.
Language:Go 40- geograph
ai4er-cdt / geograph
GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.
Language:Jupyter Notebook 37 funecology / fundiversity
📦 R package to compute functional diversity indices efficiently
Language:R 27- occCite
ropensci / occCite
Querying database aggregators and citing primary sources of resulting occurrence records.
Language:R 21 josafatburmeister / BirdSongIdentification
Fully automated machine learning pipeline for bird sound recognition
Language:Jupyter Notebook 19- Language:Python 17
naturalis / trait-geo-diverse-dl
Ecological Niche Modelling Using Deep Learning
Language:Jupyter Notebook 15pensoft / OpenBiodiv
Open Biodiversity Knowledge Management System
Language:HTML 15- Language:Java 14
BioGeoMacro / GIFT
:package: R package to extract data from Global Inventory of Floras and Traits (GIFT)
Language:R 13- Language:R 12
BioKIC / NEON-Biorepository-deprecated
Development base for the NEON Biorepository Data Portal at Arizona State University
Language:PHP 11biodiversity-specimen-data / specimen-data-use-case
iDigBio API working group repository on obtaining biodiversity specimen data in R.
Language:HTML 9luomus / laji
Frontend for Finnish Biodiversity Information Facility (FinBIF) data portal laji.fi (and other *.laji.fi frontends)
Language:TypeScript 7naturalsolutions / ecoReleve-Data
Open source biodiversity data entry software
Language:Python 7riparias / gbif-alert
GBIF Alert is a GBIF occurrence based alert system.
Language:Python 7- Language:Java 6
GBIF-Europe / nordic_oikos_2018_r
Scientific reuse of openly published biodiversity information: Programmatic access to and analysis of primary biodiversity information using R. Nordic Oikos 2018, pre-conference R workshop. Venue: 18. feb. 2018 10:00 - 19. feb. 2018 16:00, Trondheim
Language:HTML 5- BIRDS
GreenswayAB / BIRDS
:mag_right: :bird: A set of tools for Biodiversity Informatics in R
Language:HTML 5 - Language:PHP 5
beecycles / pinnacles_bee_biodiversity
We resurveyed Pinnacles National Park for native bee species and compared results to bee inventories completed 10 and 15 years earlier, as well as to similar efforts conducted across the U.S.
Language:PostScript 4MCZbase / DataShot_DesktopApp
Desktop application client intended to support an object-precapture-image-data workflow for capture of natural science collections data. See the wiki (https://github.com/MCZbase/DataShot_DesktopApp/wiki) for user documentation, or the README below for developer documentation.
Language:Java 4pieterprovoost / dwca-writer
Python package for writing Darwin Core Archives (DwC-A)
Language:Python 4- symbiota-label-generator
arbolitoloco / symbiota-label-generator
Symbiota Label Format Generator Prototype
Language:JavaScript 3 🖥️ A preconfigured appliance for biodiversity informatics work.
- Language:Jupyter Notebook 3
- Language:R 3
