bioinfomatics

There are 5 repositories under bioinfomatics topic.

• tanghaibao / goatools

  Python library to handle Gene Ontology (GO) terms

  bioinfomaticsfdrfdr-benjaminifisher-testsgene-ontologygene-set-enrichmentgenomicsgoslim-termsholm-sidaksidak
  Language:Python 748

• seqan / seqan

  SeqAn's official repository.

  cpp14bioinfomaticshigh-performancesimdsequence-alignmentsalignmentbwtindexingsuffixarrayhtslibsam-bamfastafastq-formatblastseqan
  Language:C++ 467

• flowhub-team / WholeGenomeSequencing-WGS

  Whole Genome Sequencing analysis, WGS analysis

  bioinfomaticsbioinformatics-pipelinegenomeweswgswhole-genome-sequencing
  240

• zakandrewking / escher

  Build, share, and embed visualizations of metabolic pathways.

  bioinfomaticsbiologyd3jsescherjavascriptpythonvisualization
  Language:JavaScript 210

• deeptools / pyBigWig

  A python extension for quick access to bigWig and bigBed files

  bigbedbigwigbioinfomatics
  Language:C 207

• nahmedraja / GASAL2

  sequence-alignmentgpu-accelerationcuda-librarybioinfomatics
  Language:C++ 41

• ban-m / jtk

  JTK -- a regional diploid genome assembler

  bioinfomaticsgenome-assembly
  Language:Rust 22

• ShixiangWang / geek-r-tutorial

  极客R：数据分析之道

  rr-bookr-tutorialr-bookdowngeek-rbioinfomatics
  Language:TeX 22

• mbhall88 / ontime

  Extract subsets of ONT (Nanopore) reads based on time

  bioinfomaticsnanoporetimefastqfiltersubset
  Language:Rust 19
• sapporo-service

  sapporo-wes / sapporo-service

  A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification.

  bioinfomaticsworkflow-management-systemga4gh-wesworkflow
  Language:HTML 19

• ihmpdcc / osdf-schemas

  The OSDF JSON-Schema files for the HMP project

  json-schemajsonwebservicebioinfomaticsresearchresearch-projectresearch-data-repository
  Language:Shell 13

• chamkank / Python-DNA-Tool

  Scripts for DNA translation, RNA transcription, GC content calculations, percent composition & ATCG base count calculations in Python

  dna-translationbioinfomatics
  Language:Python 11

• bacpop / CELEBRIMBOR

  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs

  bioinfomaticsmetagenomicspangenomes
  Language:Python 10

• xihaoli / MACIE

  Multi-dimensional Annotation Class Integrative Estimation

  functional-annotationgeneticsbioinfomaticsintegrative-scores
  Language:Python 9

• kyu999 / ProtParamJS

  A tool to analyze proteins

  protparamproteinbioinfomatics
  Language:JavaScript 4

• waterml / blast2hgt

  Determine horizontal transfers based on sequence similarity

  bioinfomaticsgenome-analysisdatabase
  Language:Perl 4

• anand84471 / PythonForBioinformatics

  This repository will be helpful to start using python for your Bioinformatics projects.

  pythonbioinfomaticsbioinformatics-scripts
  Language:Python 3
• siga

  chungongyu / siga

  SIGA is a de novo genome assembler compatible with the SGA file format

  genomeassemblersigabioinfomatics
  Language:C++ 3

• gkoulouras / easyFRAP-web

  A web tool for the analysis of Fluorescence Recovery After Photobleaching (FRAP) data.

  frap-analysisfrapfrap-experimentfluorescence-microscopy-imagingfluorescenceweb-applicationvb-netfluorescence-recoveryeasyfrap-webbioinformatics-analysisbioinformatics-pipelinebioinfomatics
  Language:JavaScript 3

• Mohamed-Elmanzalawi / PCR-primer-script

  Streamlining dataset analysis and primer design for efficient genetic studies. Our Project is driven by robust algorithms, aims to achieve quick and accurate results. Leveraging Muscle alignment and Primer-BLAST, the project simplifies the process to enhance the precision of genetic analysis.

  covid-19primer-designbioinfomatics
  Language:Python 3

• chris-rands / CrUtils

  Various (mostly bioinformatic) utility scripts

  bioinfomaticspythongenomics
  Language:Python 2

• dmourasi / Filogenia-em-R-para-iniciantes

  Este tutorial foi criado por Olivier De Clerk (Ugent). Atualizado e traduzido por Daniel Moura

  rbioinfomaticsbiologyphylogeneticsphylogenetic-trees
  2

• sysu-software-2022 / LoupeRunner

  A modularized LoupeRunner with step by step processing pipeline

  bioinfomaticsbioinformatics-toolpythonparallel-processingshelligem
  Language:Python 2

• YannDubs / FourRussiansRNA

  Faster algorithms for RNA-folding using the Four-Russians method

  bioinfomaticsefficientcomplexityrna-folding
  Language:C++ 2

• edikedik / lXtractor

  Feature extraction library for sequences and structures

  bioinfomaticscomputational-biologydata-analysisdata-miningfeature-extractionpythonstructural-biology
  Language:Python 1

• ekaminuma / BARCODE_STAT

  DNA BARCODE Statistics : Number of GBIF BOLD entries 2014-11-27

  bioinfomaticsdna-sequencesdna-barcodematlab
  Language:MATLAB 1

• hkrkizum / BashScript

  Scripts for RNA-seq, Windows subsystem on Linux

  ngsbioinfomaticsbash
  Language:Shell 1

• jdreyf / fat-exosome-microrna

  Data/code/output for "Adipose-derived circulating miRNAs regulate gene expression in other tissues" by Thomou, Mori, Dreyfuss, et al. (2017)

  bioinfomaticsr
  Language:R 1

• suecharo / CPFF

  bioinfomaticsbioinformatics-toolhmmerkeraspfam
  Language:Python 1

• YaoXinZhi / PheSeq

  PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies

  bayesian-deep-learningbayesian-inferencebioinfomaticsbiomedical-nlp
  Language:Python 1

• lucianogiaco / lianne

  Management flow using PBS system to analyze sequencing data from Illumina Novaseq6000

  bioinfomaticsvariant-callingvariant-analysiscoverage
  Language:R 0

• NIcolasp14 / NIcolasp14

  [About me]

  artificial-intelligencebioinfomaticsdeep-learningmachine-learning
  0

• arupgsh / NGS_PreQC

  flowcellbioinfomaticspython3illumina-sequencing
  Language:Python

• Dec-0 / SystemInitial

  For basic software installation automatically.

  bioinfomatics
  Language:Shell

• Funny-Silkie / stran

  Translation tool: process DNA or RNA to protein by your customized genetic code table

  bioinfomaticsbioinformatics-tool
  Language:C#

• gauravcodepro / arabidopsis-ontology-graphs

  a streamlit application to interact with arabidopsis plant obo for graphviz and other functions

  arabidopsisarabidopsis-thalianabioinfomaticsgraphvizjavascriptstreamlit-applicationstreamlit-webapp
  Language:Python