biogeography

There are 6 repositories under biogeography topic.

• EcoJulia / SpatialEcology.jl

  Julia framework for spatial ecology - data types and utilities

  biogeographyecologyjuliamacroecology
  Language:Julia 57
• enmSdm

  adamlilith / enmSdm

  Faster, better, smarter ecological niche modeling and species distribution modeling

  nichemodelingdistributionbiogeographysdmenmautocorrelationdistancerastermaxentglmgbmboosted-treesmaxnetecological-niche-modellingniche-modellingspecies-distribution-modelingspecies-distribution-modelsprepare-datasampling-bias
  Language:R 45
• elapid

  earth-chris / elapid

  Species distribution modeling tools, including a python implementation of Maxent

  biodiversity-informaticsbiogeographygeospatialmaxentniche-modellingspecies-distribution-modelling
  Language:Python 45

• adamlilith / enmSdmX

  Tools for Modeling Niches and Distributions of Species

  bias-correctionbiogeographyecological-niche-modellingniche-modelingniche-modellingspecies-distribution-modelingecological-niche-modeling
  Language:R 20

• PoisotLab / GBIF.jl

  Functions and types to access GBIF data from Julia

  juliaecologygbifmacroecologybiogeographyapi
  Language:Julia 19

• manaakiwhenua / virtualNicheR

  virtualNicheR: creating virtual fundamental and realised niches

  nicheniche-modellingvirtual-ecologyrecological-niche-modellingecological-simulationsbiogeographyecology
  Language:R 15

• PoisotLab / SpeciesDistributionToolkit.jl

  Work with species distributions in Julia

  bioclimbiodiversitybiogeographychelsaearthenvecologyspecies-distribution-models
  Language:Julia 13

• chenyangkang / stemflow

  A Python Package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM)

  bird-migrationgeospatialmachine-learningspatio-temporal-analysisspecies-distribution-modelingspatiotemporaladaptive-spatio-temporal-exploratory-modelbiodiversitybiogeographyebirdanimalanimal-movementecologyecology-modellingmovement-ecologybird-surveymovmentspatiotemporal-dynamicsbig-dataornithology
  Language:Python 12
• biomodelos-sdm

  PEM-Humboldt / biomodelos-sdm

  BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

  biogeographymodelingspecies-distribution-modelling
  Language:R 11

• claraqin / neonMicrobe

  Processing NEON soil microbe marker gene sequence data into ASV tables.

  biogeographybioinformaticsdada2macroecologymarker-genesneonneonmicrober-packagesoil-microbiome
  Language:R 9
• poems

  GlobalEcologyLab / poems

  Pattern-oriented ensemble modelling and simulation (with spatially explicit populations)

  biogeographypopulation-modelprocess-basedrr-packagerstats
  Language:R 9

• tahiri-lab / aPhyloGeo

  aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.

  bioinformaticsphylogeographypythonalgorithmsconsensus-treephylogeneticsbiogeographydistance
  Language:Shell 9

• mingkaijiang / biome_specific_predictability

  Calculating temperature and precipitation predictability at the global scale

  climate-datapredictabilityevolutionbiomebiogeographytemperatureprecipitationtheorinformation-theory
  Language:R 8

• V-Z / course-r-mol-data

  R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

  rmolecular-biologymolecular-evolutioncourselearningscriptsscriptingdata-analysisdata-visualizationmolecular-databioconductorphylogeneticsphylogenetic-treesphylogenypopulation-geneticspopulation-genomicspopulation-structurebiogeographyphylogeographyevolution
  Language:TeX 8

• nmatzke / PhyBEARS.jl

  Phylogenetic biogeography SSE models for large state spaces

  biogeographyevolutionphylogeneticsssecladogenesis
  Language:Julia 7

• Pakillo / FloraIberica

  An R package to get taxonomic and distribution data for the ~6500 vascular plants present in the Iberian Peninsula and Balearic Islands

  biogeographyplantsr-package
  Language:R 7
• biomodelos-website

  PEM-Humboldt / biomodelos-website

  BioModelos web application v 2

  biogeographyleaflet-maprails-application
  Language:HTML 7

• bioRgeo / bioregion

  :package: An R package to compare several methods of bioregionalizations

  rr-packagebiogeographybioregionbioregionalization
  Language:R 5

• agimenezromero / PierceDisease-GlobalRisk-Predictions

  A model to assess the global risk of Pierce's Disease of grapevines

  biogeographyclimatedisease-ecologyspecies-distribution-modelling
  Language:Julia 4

• m-orton / Arctic-Biogeographical-Analysis-Pipeline

  Arctic Community Similarity using DNA Barcoding Data

  biogeographybarcode-index-numberdna-barcodearcticchironomidaer
  Language:R 3

• mkarlik93 / MetaPlastHunter

  metagenomicschloroplastbiogeographyngs-pipelinengs-analysis
  Language:Python 3

• nnbuainain / get_confidence_interval_from_treePL

  get confidence interval from phylogenetic trees with treePL

  pythonrtreeplphylogeneticsbiogeography
  Language:Python 3
• ccb-id

  stanford-ccb / ccb-id

  The Center for Conservation Biology's imaging-spectroscopy-based species classification approach.

  remote-sensingecologybiogeographymachine-learningclassificationspecies-identity
  Language:Python 3

• camayal / treetom

  Develop repo for TreeToM

  phylogenetic-treesbiogeography
  Language:HTML 2

• ccsosa / Garcia-Merchan-et-al-Chapter-2020

  This repository is a supplementary information repository from García-Merchán et al... 2020 publication.

  biologygeneticsconservation-geneticsbiological-data-analysisbiogeography
  Language:R 2

• DataDrivenEcologicalSynthesis / VirtualBiogeography

  Analyzing the biogeographical accuracy of 🐠Finding Nemo🐡

  moviefictional-mediafinding-nemobiogeographymediaecology
  Language:R 2
• MetaLandSim

  FMestre1 / MetaLandSim

  Metapopulations Persistence and Range Expansion Simulation

  metapopulationecologybiogeographyspecies
  Language:AGS Script 2
• vuln

  phytomosaic / vuln

  Niche-based vulnerability of species and communities.

  vulnerabilitynichespeciesextremesbiogeographyecology
  Language:R 2

• rBatt / spatialDiversity

  Spatial patterns in biodiversity change

  biodiversitybiogeographyecologymacroecologyr
  Language:R 2

• tahiri-lab / py_madaclim

  A simple Python API to interact with the Madaclim database

  climate-datadata-sciencepythonbiogeographyenvironmentraster
  Language:Python 2

• tdwg / geoschemes

  A set of geographic areas (named entities and boundaries) that provides a mapping between natural biogeographic and common administrative entities.

  biogeography
  2

• bhartidk / centipede_macrogenetics

  This repository contains R scripts to reproduce results and figures from our macrogenetics study where we investigate the species traits and biogeographic variables correlated with intra-specific genetic diversity in centipede species.

  biogeographyrmacrogenetics
  Language:R 1

• hjsimpso / fungarium

  An R package for enabling the use of fungarium collection data in comprehensive trait analyses.

  rfunguildfungibiologymycoportal-datasetstraitsecologybiogeographytaxonomyinaturalistmushroomherbarium
  Language:R 1

• JennaMcCullough / Corvides-SSE

  RevBayes code used in McCullough et al. 2022 Systematic Biology

  biogeographyrstate-dependent-diversification
  Language:R 1

• nicole-a-moore / living-up-to-thermal-potentials

  Data, code & figures used to assess global patterns of potential thermal niche filling

  biogeographyclimatechangeecologyevolutionmacroecologymacroevolutionrstatsrstudio
  Language:R 1

• walidbosso / C_TSPBBO

  Implementation of the Biogeography-Based Optimization (BBO) algorithm to solve the Traveling Salesman Problem (TSP)

  bbobiogeographybiogeography-based-optimizationc-programming-languagetraveling-salesmantravelling-salesman-problemtsptsp-problemtsp-solver
  Language:C 1