usearch

There are 0 repository under usearch topic.

• usum

  prihoda / usum

  USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE

  dnaplotproteinsequencesimilarityt-sneuclustumapusearch
  Language:Python 11

• phronmophobic / usearch.clj

  A clojure wrapper for usearch, a fast open-source search & clustering engine for vectors.

  clojureusearchvector-database
  Language:Clojure 10
• AgrVATE

  VishnuRaghuram94 / AgrVATE

  Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

  agr-operonagr-groupmummeraureususearchagrstaphylococcus-aureusstaphylococcusframeshiftsallelesoperonquorum-sensingbioinformaticssequencinggenomicstyping
  Language:HTML 9

• siobhon-egan / usearch_analysis

  Sequence analysis using USEARCH pipelines

  sequencesequence-analysisusearchusearch-analysisusearch-pipelines
  Language:Shell 6

• mbbu / 16S-mini-project

  This is a workflow for 16S rRNA analysis.

  qiime2usearchmetadataqiime2-environment
  Language:Shell 3

• LabFBARRO / CRISPRanalysis

  InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.

  crisprcrispr-cas9crispr-analysisusearch
  Language:Python 2

• andrewd789 / Barcoding_invertebrate_biodiversity

  Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.

  pythonrusearchvsearchbiodiversityinvertebratesdna-barcodepcr
  Language:R 1

• telatin / usearch11_docs

  Markdown documentation for USEARCH 11 (see drive5.com for offical docs)

  usearch
  Language:Perl 1

• Telleasha-Greay / Illuminating-the-bacterial-microbiome-of-Australian-ticks-USEARCH-amplicon-NGS-pipeline

  These scripts were used to bioinformatically process the NGS data associated with the manuscript entitled "Illuminating the bacterial microbiome of Australian ticks from companion animals with next-generation sequencing", authored by Telleasha L. Greay, Kimberly L. Evasco, Megan L. Evans, Paola Magni, Una M. Ryan and Peter J. Irwin. The raw data is deposited in NCBI's sequence read archive under the accession PRJNA640465. Please visit my website and contact me if you want to do a similar analysis and need help.

  usearchusearch-pipelineszotusilluminamiseqngsngs-pipelinengs-analysisusearch-analysis
  Language:Shell 1

• sophiagosselin / ICE_BLAST

  Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

  bioinformaticsblastpfastaperlpsiblastusearch
  Language:Perl 0