lucapinello

CRISPResso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

pyacaia

Python module to interact with Acaia scales via Bluetooth (BLE)

Haystack

Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

bsub_jupyter

Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connection later or to terminate it.

pydecentscale

Python module to interact with the Decent Scale scales (https://decentespresso.com/scale) via Bluetooth (BLE).

SR700_Artisan_Server

Extended version of the SR700-Artisan-PDServer for Phidget

beans_autodoser_acaia

pydecora_ble

Python module to interact with Leviton dimmers (for example this one:https://www.leviton.com/en/products/ddl06-blz) via Bluetooth (BLE).

smartfoamer

SR700_Artisan_Profile_Builder

Create artisan profiles using the alarms and the modified version of the freshroastsr700 library for phidget

test_nat_prot

alexa_grinder

Voice controlled grinder with precise timing using HS100 and amazon alexa

artisan_peripage

bayesian-deep-learning-demystified

In which I try to demystify the fundamental concepts behind Bayesian deep learning.

beastroaster

bioconda-recipes

Conda recipes for the bioconda channel.

bluepy

Python interface to Bluetooth LE on Linux

cripsr_nanocourse_hms

Material for crispr nanocourse for harvard medical school

crisporWebsite

All source code of the crispor.org website

freshroastsr700_phidget

Extension of the freshroastsr700 to drive PID of the SR700 with an external Phidget

Kaka_pid_control

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

ODSC_Neural_Nets_11-04-17

Talk "Deep Learning From Scratch Using Python" to be delivered at ODSC West on November 4, 2017

parallel-tutorial

Parallel computing in Python tutorial materials

Phidget22Python

Phidget22Python adapted to pip and originally from https://www.phidgets.com/downloads/phidget22/libraries/any/Phidget22Python

plotly.js

Open-source JavaScript charting library behind Plotly and Dash

psb-manuscript

Manuscript source for the People of the Pacific Symposium on Biocomputing

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

STREAM

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

traj-formats

Format specifications for communicating trajectory information.