carpenter-lab
There are 3 repositories under carpenter-lab topic.
cytomining / pycytominer
Python package for processing image-based profiling data
Language:Python 69broadinstitute / cell-health
Predicting Cell Health with Morphological Profiles
Language:HTML 35Cell Painting and other pipelines from the Imaging Platform
High-dimensional phenotyping to define the genetic basis of cellular morphology
Language:Jupyter Notebook 6:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
Language:Python 6Predicting pharmacodynamic responses to cancer drugs using cell morphology
Language:Jupyter Notebook 6Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic
Language:Jupyter Notebook 5carpenterlab / open-science-rules
Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
Language:HTML 5:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
Language:Python 2- Language:JavaScript 2
Scripts for processing morphological profiling data using cytominer
Language:R 1- Language:Shell 1
Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module
Language:Python 1
