rraadd88

beditor

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

chrov

🧬Chromosome Visualizations

htsimaging

🔬Python package for high-throughput single-cell imaging analysis.

dseq

dseq: Deep sequencing analysis in dataframes

parag

parag🎆Interactive visualization of higher-order graphs in Python

roux

🧰Convenience functions in Python.

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

safepy

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

yeast_segmentation

[This fork allows user-friendly command-line usage] User friendly mask-rcnn segmentation for images of yeast cells

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-biological-image-analysis

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

awesome-biological-visualizations

A list of web-based interactive biological data visualizations.

awesome-CRISPR

List of software/websites/databases/other stuff for genome engineering

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-network-analysis

A curated list of awesome network analysis resources.

awesome-python-data-science

Probably the best curated list of data science software in Python.

cellstar

Algorithm for round cells identification in the brightfield microscopy images.

FLEX_R

FunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens

GNN-Benchmark

Characterizing the Efficiency of Graph Neural Network Frameworks with a Magnifying Glass

orthrus

pyensembl

Python interface to ensembl reference genome metadata

pyfaidx

Efficient pythonic random access to fasta subsequences

pytorch_geometric

Graph Neural Network Library for PyTorch

quarto-examples

A repository of self-contained quarto examples

rraadd88

scHumanNet

Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3

scikit-image

Image processing in Python

sgatools

For the analysis and visualization of array-based genetic interaction screens

skimage-web

scikit-image web page sources

wavemaker-cards-v4

[This fork's 'ui-suggestions' branch contains UI-related suggestions] The Version 4 release of wavemaker - Nov 2022