fbaumdicker's repositories
goldfinder
Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships
SpacerPlacer
ancestral reconstruction and likelihood analysis for CRISPR spacer arrays
AIMsetfinder
AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.
adding-species-manuscript
manuscript materials for the adding species paper
applied_population_genetics
A textbook on population genetics
erc-latex-template
LaTeX template for ERC proposals
lecture_notes
Lecture Notes on Computational and Mathematical Population Genetics
msprime-1.0-paper
Publication describing msprime 1.0
pan-genome-analysis
Processing pipeline for pan-genome visulization and exploration
Phylogenetic-trees-python
This repository implements Phylogenetic Trees in Python
phylogenetics
A tutorial on making phylogenetic trees in python
SMBE-SGE-2019
Material for SMBE-SGE-2019 workshop
stdpopsim
A library of standard simulation models for msprime