dmri

There are 0 repository under dmri topic.

• dPys / PyNets

  A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

  brain-connectivitydecision-treesdipydmriensemble-learningensemble-samplingfmrifuzzy-logicgraph-neural-networksgridsearchmultiversenetworksnetworkxnilearnnipypeoptimizationtractographyworkflow
  Language:Python 122

• MIC-DKFZ / MITK-Diffusion

  MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

  brainbrainextractiondenoisingdicomdiffusion-mridiffusion-mri-simulationdiffusion-tensordmrifiber-tractsfiberfoxmitk-diffusionmodellingpeakqballsregistrationsegmentationsimulationsupplement-181tractographytractseg
  Language:C++ 79
• connectomemapper3

  connectomicslab / connectomemapper3

  Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

  bidsbidsappdmrifmriconnectomebids-appspipelineschuvbrainparcellationpythoneegdockersingularity
  Language:HTML 71

• SlicerDMRI / whitematteranalysis

  White matter tractography clustering and more...

  diffusion-mridmrineuroimagingtractographywhite-matter
  Language:Python 69

• SlicerDMRI / ORG-Atlases

  ORG Fiber Clustering White Matter Atlas

  atlasdiffusion-mridmrineuroimagingtractography
  26

• carpentries-incubator / SDC-BIDS-dMRI

  Introduction to dMRI

  carpentries-incubatorneuroimagingpre-alphalessonbidspythonprogrammingdwidmridiffusion-mridipytractographyfslants
  Language:Jupyter Notebook 24

• delucaal / MRIToolkit

  diffusion-mridmriinversion-recoveryivimrelaxometrymridiffusion-kurtosis-imagingdiffusion-tensor-imagingepi-correctioncsdtractographyfibertrackingclusteringwhitematterbrain
  Language:MATLAB 24
• PyDesigner

  muscbridge / PyDesigner

  A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

  dmridmriprepdiffusion-mridiffusion-mapsdwikurtosisdiffusion-preprocessingtractography
  Language:Python 23

• treanus / KUL_NIS

  KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

  image-processingneuroimagingfmridmri
  Language:Shell 15
• MRtrix3Tissue

  3Tissue / MRtrix3Tissue

  MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

  diffusion-mridmri3-tissuecsd3-tissue-csdmrtrixmrtrix3tractography
  Language:C++ 10

• KUL-Radneuron / KUL_FWT

  Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

  dmritractography
  Language:Shell 7

• lorifranke / FiberStars

  Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.

  scientific-visualizationdmrimedical-imagingreactjstractographyvisualizationtool
  Language:JavaScript 6

• scil-vital / tractolearn

  Tractography learning

  autoencoderbundlingdeep-learningdiffusion-mridmrifilteringgenerative-modelrepresentation-learningstreamlinetrackingtractographywhite-matterneuroanatomyneuroimaging
  Language:Python 6

• Hyedryn / elikopy

  ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

  microstructure-fingerprintingfsltbsspython-librarydiffusion-imagingpreprocessingdmridiamondnoddidti
  Language:Python 5

• PennLINC / qsirecon

  Reconstruction of preprocessed q-space images (dMRI)

  bidsbids-appsbids-formatbidsappdiffusion-mridmridwimri
  Language:Python 5

• christiennedamatac / fixel_based_analysis

  Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"

  adhdcognitiondmridwifixel-based-analysislongitudinal-studiesneurosciencewhite-matter
  Language:Shell 4

• brain-microstructure-exploration-tools / abcd-registration-experiments

  experiments with diffusion image registration

  abcd-studydmri
  Language:Jupyter Notebook 2

• christiennedamatac / tracula

  Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"

  adhdcognitiondmridwimrineurosciencetractographytraculawhite-matter
  Language:Shell 2

• DiffusionMRITool / spherical_uniform_sampling

  This code is used to optimize single or multiple shell uniform sampling schemes in diffusion MRI via continuous optimization and discrete optimization.

  dmrisamplinguniform-samplingdiffusion-mrisampling-schemes
  Language:Python 2

• multinetlab-amsterdam / data_preprocessing

  This repo contains preprocessing scripts used in the lab, organized (mainly) by imaging modality.

  dmrifmrimegneuroimagingpreprocessingresting-state
  Language:Jupyter Notebook 2

• TylerSpears / fenri

  FENRI (Fiber Orientations from Explicit Neural Representations) Implementation Repository, presented at the ISBI 2024 conference

  deep-learningdiffusion-mridmridwiimplicit-neural-representationmachine-learningmripythonpytorchsuper-resolutiontractography
  Language:Jupyter Notebook 2

• brain-microstructure-exploration-tools / abcd-noddi-tbss-experiments

  experiments with neuroimaging pipelines that use noddi and tbss

  abcd-studydmri
  Language:Python 1

• brightside51 / dMRI_cGen

  MSc Thesis on Conditional dMRI Generative AI Models and their applicability in the decreasing scan acquisition times and bettering of patient's quality of life.

  conditional-generationdmrigenerative-aiimage-generation
  Language:Jupyter Notebook 1

• christiennedamatac / longitudinal_tract_based_spatial_statistics

  Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"

  adhddwilongitudinal-analysismritbsswhite-mattercognitiondmrineuroscience
  Language:Shell 1

• DelinteNicolas / TractAnalysis

  Analysis of the structural connectivity of diffusion data

  connectivitydmritractography
  Language:Python 1

• GewoonMaarten / spherical-dmri-conv

  Sub-sampling on multi-dimensional diffusion MRI with rotation equivariance.

  dmrigeometric-deep-learningpytorchrotation-equivariance
  Language:Jupyter Notebook 1

• JonGant / DWIS

  Diffusion Weighted Image Simulator

  simulated-imagespythondmri
  Language:Python 1

• la-boite / diffusion_ODF

  diffusion-mridmri
  1

• SlicerDMRI / tutorials

  SlicerDMRI tutorial repository

  diffusion-mri3d-slicer-extensiondmrineuroimaging
  Language:HTML 1

• zhangjb35 / jinbo_brain_book

  Record all learned knowledge of MRI

  mridmrifmriasl
  Language:Python 1

• christiennedamatac / sps_dmri

  Scripts related to "Exploring the relationships between sensory processing sensitivity, decision-making, and brain white matter microstructure"

  diffusion-weighted-imagingdwienvironmental-sensitivitysensory-processing-sensitivityspswhite-matter-microstructuredmrifixel-based-analysis
  Language:R 0

• micerr / Epilepsy-dMRI-VNS

  Assessing microstructural brain differences in epileptic patients with vagus nerve stimulation via diffusion MRI, tractography and machine learning

  antsdmridtifeaturefingerprintfreesurfermicrostructuremlnoddiselectiontractographyvns
  Language:Jupyter Notebook 0

• oscarjalnefjord / ivim

  An end-to-end python package for intravoxel incoherent motion (IVIM) analysis of diffusion MRI data

  dmriivimivim-dkimri
  Language:Python 0

• umn-milab / qmri-ald

  Image analysis pipelines of qunatitative MRI (qMRI), including diffusion MRI (dMRI), in patients with adrenoleukodystrophy (ALD)

  diffusion-tensor-imagingfslmagnetic-resonance-imagingmedical-image-analysismedical-imagingneurologyadrenoleukodystrophydmrimribashmatlab
  Language:MATLAB 0

• brainhack-school2023 / subramani_Romy_project

  This repository contains the code and documentation for the Brainhack School project on exploring the structure-function coupling and segregation analysis in video-watching electroencephalography (EEG) data. The project aims to investigate how the electrophysiological activity during video-watching is related to the underlying anatomical structure

  dmrieegstructure-functionvideo-watching
  Language:Python

• SlicerDMRI / wmap

  White Matter Analysis Pipeline (WMAP)

  dicomdiffusion-mridmrineuroimagingpipelinepreprocessingtractographywhite-matter
  Language:Python