3d-images

There are 1 repository under 3d-images topic.

seung-lab / connected-components-3d
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
connected-components python numpy biomedical-image-processing cpp union-find image-processing cython 3d decision-tree 2d algorithm 3d-images neighborhood path-compression ccl cclabel labeling-algorithms surface-area periodic-boundary
Language:C++ 333
porespy
PMEAL / porespy
A set of tools for characterizing and analying 3D images of porous materials
python scientific-visualization image-analysis voxel-generator tomography porous-media porous-materials porespy 3d-images
Language:Python 280
M3DV / ACSConv
[IEEE JBHI] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!
acs-convolution 3d-convolution 3d-images medical-image-analysis
Language:Python 157
mattools / matImage
Image Processing library for Matlab
matlab image-processing 3d-images matlab-toolbox image-analysis
Language:MATLAB 100
MorphoLibJ
ijpb / MorphoLibJ
Collection of mathematical morphology methods and plugins for ImageJ
image-processing image-analysis imagej fiji mathematical-morphology 3d-images morpholibj
Language:Java 95
DCBIA-OrthoLab / SlicerAutomatedDentalTools
A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS
3d-slicer-extension 3d-images 3d-models deep-learning landmark-localization machine-learning orthodontics segmentation monai pytorch
Language:Python 72
Cheng-Lin-Li / SegCaps
A Clone version from Original SegCaps source code with enhancements on MS COCO dataset.
capsule-networks capsule-nets seg-caps python3 deep-learning mscoco-dataset capsule segmentation coco keras tensorflow image-seg-tool luna16 binary-image-segmentation 2d-images 3d-images 2d 3d
Language:Jupyter Notebook 64
PoreFlow-Net
je-santos / PoreFlow-Net
3D CNN to predict single-phase flow velocity fields
cnn 3d keras-tensorflow porous-media-flow 3d-images lbm surrogate-models convolutional-neural-networks digital-rockphysics digital-rocks permeability poreflow-net convolutional-neural-network single-phase lattice-boltzmann neural-networks machine-learning keras tensorflow gpu
Language:Python 60
its2easy / animate-images
Javascript plugin that animates a sequence of images to use in complex animations or pseudo 3d product view
animation 360 360-view 360-photo 360degree spin 3d 3d-images 3d-view pseudo3d sequence rotation frames animate image-sequence product-3d canvas
Language:JavaScript 51
arttumiettinen / pi2
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
image-analysis python 3d-images tomography image-processing brain-imaging c-plus-plus cluster-computing computing-cluster high-performance-computing stitching non-rigid-registration non-rigid-stitching cross-platform bioimaging bioimage-analysis bioimage-informatics
Language:C++ 48
seung-lab / chunkflow
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
chunk image-processing connectome volumetric-data image-segmentation composable-operators 3d-images convnet-inference
Language:Python 46
jameslahm / labelme
A image annotation software for 2D or 3D images
image-annotation 3d-images deep-learning
Language:C++ 42
GuillaumeMougeot / biom3d
Easy Volumetric Segmentation with Deep Learning
3d-image-segmentation 3d-images artificial-intelligence automl deep-learning medical-imaging microscopy segmentation
Language:Python 17
Devin-Taylor / MultiAug
Multi-modal data augmentation for machine learning
machine learning augmentation multi-modal data 3d-images tabular
Language:Python 15
mattools / matlab-image-class
Generic class for representation of 2D/3D...5D images with Matlab
matlab matlab-image 5d-images image-processing 3d-images multidimensional-data
Language:MATLAB 15
motokimura / kits19_3d_segmentation
PyTorch implementation of 3D U-Net for kidney and tumor segmentation from KiTS19 CT scans.
3d-images 3d-unet computer-vision ct-scans kits19 medical-imaging pytorch
Language:Jupyter Notebook 12
ShouYuqing / rigid
Rigid registration for 3D MRI
machine-learning mri-images registration 3d-images unsupervised-learning
Language:Python 12
its2easy / animate-sprite
Javascript plugin to animate frames from sprite image
360 360-photo 360-view 3d-images 3d-product animation rotation spin sprite sprites
Language:JavaScript 10
jcreinhold / selfsupervised3d
methods to support self-supervised learning with 3D images
pytorch medical-image-analysis deep-learning self-supervised-learning 3d-images
Language:Jupyter Notebook 10
patmjen / pygorpho
Python library for fast 3D mathematical morphology using CUDA
cuda 3d-images mathematical-morphology python python3 python-bindings
Language:Python 10
cselab / stitch
A scalable implementation of WobblyStitcher for 3D microscopy images
python numpy visualization image-analysis 3d-images microscopy-images segmentation-pipeline medical-imaging parallel multiprocessing
Language:Python 8
multifrac
$multifrac$ ivangtorre / multifrac
This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.
multifractal-analysis imagej-plugin imagej 3d-images java fractal multifractal
Language:Java 8
abachaa / 3D-MIR
3D Medical Image Retrieval in Radiology
3d-images caption-generation image-processing image-search multimodal-search radiology medical-images
Language:Jupyter Notebook 7
odrevet / Multi-Picture-Object
Generate a 3D picture (Multi Picture Object) from two jpeg
mpo multi-picture 3d-images 3ds
Language:PHP 7
jewettaij / visfd
volumetric image toolkit for simple feature detection (segment tomograms)
image-processing tomography mrc-format tensor-voting electron-microscopy 3d-images segmentation cryo-em cryoem membrane-detection
Language:C++ 6
i-e-b / ImageTools
A few image algorithms in C# for my own research
wavelet image-compression image-algorithms 3d-images encoding c-sharp
Language:C# 3
drkarim / lassy
A C++ library for 3D image investigation using surface normal profiles
vtk 3d-images nrrd niftii cardiac-segmentation mri-images itk python c-plus-plus
Language:Jupyter Notebook 2
GaganHeer / mri-python-processing
Digital Images Processing and Segmentation for Brain Tumor MRI
3d-images image-processing keras machine-learning python tensorflow tumor-segmentation
Language:HTML 2
assafna / cell-ecm-project
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
3d-images bioimage-analysis cells correlation extracellular-matrix fiji-macro granger-causality quantification time-series-analysis
Language:Python 1
drchrisch / SynapseLocator
Perform registration of 3D imaging data and localization of spots (synapses/boutons) in semi-automatic mode (with graphical user interface).
3d-images image-registration machine-learning scanimage synapse two-photon
Language:MATLAB 1
kaftanski / image_viewer
Easy-to-use 3D image viewer to include into your medical image processing pipelines.
3d-images educational image-viewer image-processing
Language:Python 1
phonhay103 / doc3D-renderer
Blender rendering codes for doc3D-dataset (Paper: https://www3.cs.stonybrook.edu/~cvl/projects/dewarpnet/storage/paper.pdf)
dewarping 3d-images blender matlab python
Language:Python 1
walidmourou / semantic_segmentation
Semantic segmentation for 2D and 3D images with U-net and V-net
keras tensorflow computer-vision segmentation classification 3d-images deep-learning deep-neural-networks machine-learning
Language:Jupyter Notebook 1
ssharkov03 / Vascular-Deformation-Mapping
Synthetic 3d image generation for Vascular Deformation Project.
image-generation simpleitk volumentations 3d-images
Language:Python 0
Abdulix / model-uploader-server
Artificial Intelligent model that generted 3D-Images
3d-images 3d-models artificial-intelligence
Language:JavaScript
EricYuan8307 / 5LSH0
5LSH0 Computer Vision and 3D Image Processing
3d-images image-processing machine-learning tensorflow
Language:Jupyter Notebook