volumetric-data

There are 1 repository under volumetric-data topic.

wolny / pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
semantic-segmentation unet unet-pytorch 3d-unet groupnorm pytorch-3dunet pytorch dice-coefficient volumetric-data 3d-segmentation residual-unet
Language:Jupyter Notebook 1851
andyzeng / tsdf-fusion-python
Python code to fuse multiple RGB-D images into a TSDF voxel volume.
rgbd tsdf kinect-fusion depth-camera 3d-deep-learning volumetric-data cuda 3d-reconstruction 3d vision artificial-intelligence
Language:Python 1150
andyzeng / tsdf-fusion
Fuse multiple depth frames into a TSDF voxel volume.
rgbd tsdf kinect-fusion depth-camera 3d-deep-learning volumetric-data cuda 3d-reconstruction 3d vision artificial-intelligence
Language:Cuda 706
cvlab-epfl / voxel2mesh
Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data
volumetric-data 3d-surfaces mesh-networks mesh-generation
Language:Python 143
kuixu / 3d-deep-learning
3D Deep Learning works
3d deep-learning volumetric-data 3d-shapes
141
seung-lab / cloud-volume
Read and write Neuroglancer datasets programmatically.
neuroglancer volumetric-data python cloud numpy connectomics microscopy microscopy-images chunked-image biomedical-image-processing s3 gcs mesh skeletons serverless big-data electron-microscopy tensor matrix large-image
Language:Python 125
kimimaro
seung-lab / kimimaro
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
biomedical-image-processing teasar skeletonization connectomics python3 python2 python skeletons volumetric-data image-segmentation voxel centerline medial-axis-transform centerline-extraction computer-vision-algorithms cross-section cross-section-area
Language:Python 125
zyl200846 / 3D-UNet-PyTorch-Implementation
The implementation of 3D-UNet using PyTorch
unet pytorch pytorch-implementation volumetric-data cross-validation 3d-unet semantic-segmentation 3d-segmentation
Language:Python 98
mahmoodlab / TriPath
Analysis of 3D pathology samples using weakly supervised AI - Cell
3d-medical-images 3d-path cell 3d-mil 3d-multiple-instance-learning 3d-pathology volumetric-data weakly-supervised-learning 3d-tissue-imaging volumetric-multiple-instance-learning
Language:Python 60
forknet
wangyida / forknet
ForkNet: Adversarial Semantic Scene Completion from a Single Depth Image - ICCV 2019
volumetric-data semantic-segmentation depth-images nyu suncg iccv2019
Language:Python 58
hasibzunair / uniformizing-3D
[MICCAI'2020 PRIME] Uniformizing Techniques to Process CT scans with 3D CNNs for Tuberculosis Severity Estimation.
deep-learning information-retrieval computed-tomography convolutional-neural-networks volumetric-data classification 3d-data
Language:Jupyter Notebook 55
seung-lab / zmesh
Marching Cubes & Mesh Simplification on multi-label 3D images.
marching-cubes marching-cubes-algorithm connectomics biomedical-image-processing mesh-simplification volumetric-data meshing mesh-generation mesh-processing python
Language:C++ 55
seung-lab / chunkflow
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
chunk image-processing connectome volumetric-data image-segmentation composable-operators 3d-images convnet-inference
Language:Python 47
seung-lab / igneous
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
neuroglancer python cloud kubernetes docker visualization python3 connectomics downsample meshing skeletonization downsampling volumetric-data multi-resolution ccl connected-components-labeling
Language:Python 40
rshkarin / quanfima
Quanfima (Quantitative Analysis of Fibrous Materials)
data-analysis material-science volumetric-data morphological-analysis
Language:Python 28
raidionics / AeroPath
🫁 AeroPath: An airway segmentation benchmark dataset with challenging pathology
ai airway ct deep-learning image-processing medical-imaging segmentation volumetric-data voxel bronchi annotated benchmark dataset gradio huggingface raidionics zenodo huggingface-datasets huggingface-hub
Language:Jupyter Notebook 23
je-santos / syntheticFractures
Matlab codes to create synthetic fractures for multiphase simulation
fractures multiphase-flow volumetric-data rock
Language:MATLAB 13
ctom2 / lucyd-deconvolution
A Feature-Driven Richardson-Lucy Deconvolution Network
deblurring deconvolution deep-learning denoising fluorescence light-sheet microscopy volumetric-data
Language:Python 12
DavinderMaverick / VolumeRaycasting
Volume Data Rendering using GPU Raycasting/Raymarching
volume-rendering volumetric-data opengl
Language:C++ 11
alvin-yang68 / Marching-Cubes
Implementation of the Marching Cubes algorithm on Python.
isosurface-mesh marching-cubes volumetric-data
Language:Jupyter Notebook 10
seung-lab / tinybrain
Image pyramid generation for grayscale and segmentation image resize.
downsample image-processing image-segmentation image-pyramid image-hierarchy python cython countless average-pooling mode-pooling volumetric-data biomedical-image-processing resize resize-images image-pyramids
Language:Python 9
hasibzunair / tuberculosis-severity
10th place solution to the ImageCLEF Tuberculosis 2019 - Severity Scoring.
deep-learning medical-imaging volumetric-data tuberculosis classification 3d-convolutional-network
Language:Jupyter Notebook 7
seung-lab / contact-points
Find contact points in a 3D Volume.
image-processing volumetric-data connected-components numpy 3d
Language:Python 6
skrasekmichael / NonlinearFilters
Bachelor's thesis - 3D denoising filters.
bilateral-filter image-processing denoising volumetric-data volume-rendering 3d-bilateral-filter integral-image 3d-non-local-means-filter non-local-means-filter parallel-filter c-sharp
Language:C# 4
hofmannu / CLAHE3D
A volume processing toolbox written in C++ and CUDA. Works as standalone C++ application or with a dedicated GUI.
image image-processing volume volumetric-data contrast-enhancement contrast gpu cuda gui
Language:C++ 3
3D-Reaction-Diffusion
PedroRavaglia / 3D-Reaction-Diffusion
3D reaction diffusion project using WebGL 2.0 and ray casting to visualize the volume data.
javascript webgl reaction-diffusion volume-rendering volumetric-data ray-casting procedural webgl2 webgl-computer-graphics webgl-shader
Language:JavaScript 3
hasibzunair / volumetric-viewer
Volumetric Viewer: A dead simple utility script to visualize different slices in volumetric data.
volumetric-data image-viewer visualization
Language:Python 2
HIVE-ResearchGroup / volumetric-data-interaction
Interaction with volumetric data such as the arbitrary slicing with a handheld tablet
augmented-reality volumetric-data touch-inputs surface-data cutting-plane tangible-user-interfaces spatial-inputs
Language:C# 2
VCL3D / nevergrad
Nevergrad Optimizer Benchmarking for 3D Performance Capture
algorithm-competitions benchmark derivative-free-optimization heuristic-optimization heuristic-search-algorithms nevergrad performance-capture volumetric-capture volumetric-data zeroth-order-optimization
Language:Python 2
alexteghipco / BrainMontager
Make brain montages with and without outlines
brain visualization volumetric-data
Language:MATLAB 1
alexteghipco / volDNN
Relatively flexible examples for building DNNs with volumetric data in pytorch
dnn 3d-cnn cnn deep-learning vgg volumetric 3d-volumetric-cnn classification mri volumetric-data
Language:Python 1
aplbrain / bossphorus
A BossDB-like volumetric datastore in Rust
rust volumetric-data 3d bossdb
Language:Rust 1
mjoppich / surfacenet_python
SurfaceNets implementation in python3 // Volumetric Data to STL
volumetric-data python3 stl surfacenet polygonal
Language:Python 1
ptahmose / SqliteImgDoc
An experiment - use SQLite as a fileformat for multidimensional tiled images (in 2D and 3D)
cpp fileformat gigapixel gigapixel-images sqlite sqlite3 volumetric-data
Language:C 1
Grimpy101 / bvp-tools
A set of tools for BVP (Blocky Volume Package)
3d-volume bvp compression formatting vizualization volumetric-data
Language:Rust 0
jdmayer / AR_Volumetric-Data-Interaction-with-Tablet
Master thesis "Volumetric data interaction in AR Using a Handheld Touch-Sensitive Tablet"
augmented-reality surface-data tablet unity3d volumetric-data
0

volumetric-data

wolny / pytorch-3dunet

andyzeng / tsdf-fusion-python

andyzeng / tsdf-fusion

cvlab-epfl / voxel2mesh

kuixu / 3d-deep-learning

seung-lab / cloud-volume

seung-lab / kimimaro

zyl200846 / 3D-UNet-PyTorch-Implementation

mahmoodlab / TriPath

wangyida / forknet

hasibzunair / uniformizing-3D

seung-lab / zmesh

seung-lab / chunkflow

seung-lab / igneous

rshkarin / quanfima

raidionics / AeroPath

je-santos / syntheticFractures

ctom2 / lucyd-deconvolution

DavinderMaverick / VolumeRaycasting

alvin-yang68 / Marching-Cubes

seung-lab / tinybrain

hasibzunair / tuberculosis-severity

seung-lab / contact-points

skrasekmichael / NonlinearFilters

hofmannu / CLAHE3D

PedroRavaglia / 3D-Reaction-Diffusion

hasibzunair / volumetric-viewer

HIVE-ResearchGroup / volumetric-data-interaction

VCL3D / nevergrad

alexteghipco / BrainMontager

alexteghipco / volDNN

aplbrain / bossphorus

mjoppich / surfacenet_python

ptahmose / SqliteImgDoc

Grimpy101 / bvp-tools

jdmayer / AR_Volumetric-Data-Interaction-with-Tablet