sidchop

RepoNeuroVis

Reproducible and Programmatic Human Neuroimaging Visualisations

brainconn

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

neuRo-vis-BrainHack-2021

carpetplotR

Fast and easy visualization of fMRI data quality using carpet plots.

NetworkDeformationModels

Code and data for STAGES network deformation models paper.

PredictingCognition

NAPPY_DCM

Data quality control report for the Dynamic Causal Modelling study using the for the Neural Adaptations in the PostPartum Year (Nappy) study.

STAGES_rs-fMRI

Code for paper: Functional Connectivity in Antipsychotic-Treated and Antipsychotic-Naive Patients With First-Episode Psychosis and Low Risk of Self-harm or Aggression

braincode

braincode_selector

CBIG

connectomeQC

A accessible automated pipeline for resting-state fMRI quality control.

braincodepy

braincodeR

cv

My CV

DiCER

Diffuse Cluster Estimation and Regression. A de-noising tool.

ggseg

Plotting tool for brain atlases, in ggplot

ggseg3d

ggseg3d R package for cisualising brain atlases through plotly

micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Readthedoc documentation below

plotly

An interactive graphing library for R

PsychosisConnectome

sidchop.github.io

SIR_simulator

agent-based S-I-R model for neurodegeneration

surface_preprocessing

Surface Preprocessing Pipeline for human fMRI (cocoanlab)

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

VisualiseRegressoRs

Some r code to visualise what nuisance regressors (global signal, FD, DiCER etc) look like spatially.

yfinance

Yahoo! Finance market data downloader (+faster Pandas Datareader)