anatomy

There are 3 repositories under anatomy topic.

• brainrender

  brainglobe / brainrender

  a python based software for visualization of neuroanatomical and morphological data.

  anatomyneurosciencepythonvisualization
  Language:Python 508
• openbiomechanics

  drivelineresearch / openbiomechanics

  The open source initiative for anonymized, elite-level athletic motion capture data. Run by Driveline Baseball.

  biomechanicskinematicskineticskinetics-datasetspythonanatomysportsbaseballmotion-capturebaseball-biomechanicssports-biomechanics
  Language:Jupyter Notebook 189
• cell-ontology

  obophenotype / cell-ontology

  An ontology of cell types

  obofoundrycell-ontologyontologyanatomycell-typesowlanatomy-ontologysemantic-webgenomicstranscriptomicsmetazoamonarchinitiative
  Language:Makefile 132
• uberon

  obophenotype / uberon

  An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

  obofoundryuberonontologyanatomymonarchinitiativegross-anatomymetazoaanatomy-ontologygeneontology
  Language:Emacs Lisp 129

• navis-org / navis

  Python library for analysis of neuroanatomical data.

  neuronsswcanatomyvisualizationneurosciencepython3dneuprintskeletonssegmentationmeshesvolumesblenderhemibrainnblasttransformconnectomeneuroanatomymorphometricflywire
  Language:Python 79

• sidney-eliot / 3d-artists-handbook

  Covers all stages of the 3D creation process, as well as the theory side of things. Helpful for 2D artists as well.

  3dblendermarmosetsculptingsubstance-painterunreal-engineartcharacter-artzbrushtexturinggame-developmentanatomyhotkeysaddon3d-artartistgame-artgame-artistsguide3d-artists
  Language:Python 52

• Kevin-Mattheus-Moerman / BodyParts3D

  Clone of the BodyParts3D/Anatomography 3D model files

  anatomyanatomy-ontologymeshes3d-printinggraphicsgeometry-processinggeometrystl
  Language:HTML 47

• chrislarkee / VR-Neuroanatomy

  Explore and dissect a complete brain model in VR. Made for the Oculus Quest in Unity.

  oculus-questunity3danatomyvirtual-reality
  Language:C# 37

• ebi-gene-expression-group / anatomogram

  Anatomogram illustrating Expression Atlas experiments

  anatomyreactsvg
  Language:JavaScript 34

• SainsburyWellcomeCentre / lasagna

  3-D imaging visualisation through slicing

  pyqtgraphpythonneuroscienceanatomyregistration
  Language:Python 26

• navis-org / pymaid

  Python library to interface with CATMAID servers. Fully interoperable with navis.

  catmaidpythonblender3dnblastanatomyneuron
  Language:Python 23

• FlyBase / drosophila-anatomy-developmental-ontology

  The home of the Drosophila anatomy ontology

  anatomydrosophilaflybaseobofoundryontology
  Language:Jupyter Notebook 18

• MKLab-ITI / MyoWebToolkit

  Web tools to do research with Myo

  myosimulationemgimuthreejsthree-jsmyo-armbandmyo-devicesemg-dataanatomysignal-processing3d-visualizationphysics-simulationdata-collection
  Language:JavaScript 17

• hetio / medline

  Computing term cooccurrence in MEDLINE

  rephetiohetionetmedlinepubmedcooccurrencesymptomsdiseasesanatomytext-miningliterature
  Language:Jupyter Notebook 16

• SWC-Advanced-Microscopy / StitchIt

  Stitching of large tiled datasets

  anatomymicroscopymatlabtilestitchingstitched-imagesneuroscienceimaging
  Language:MATLAB 16

• brainglobe / brainreg-napari

  Automated 3D brain registration in napari with support for multiple species and atlases.

  anatomyatlasesbrainmicroscopynaparineuroscienceregistration
  Language:Python 14
• BrainMesh

  Yaoyao-Hao / BrainMesh

  A Matlab GUI for rendering 3D mouse brain structures

  mousebrain3dvisulizationanatomyneurosciencematlabguicocoframerbrainrenderallenccf
  Language:MATLAB 13

• fphammerle / freesurfer-stats

  Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics

  freesurferaparccortexparcellationstatisticsneuroimagingpandassurfacebraindataframeanatomy
  Language:Python 12

• obophenotype / biological-spatial-ontology

  An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces

  obofoundryanatomymetazoaanatomy-ontologyspatial
  Language:Makefile 12
• speccer

  phun-ky / speccer

  A zero dependency package to highlight elements

  annotateannotationspeccerspecificationspecsspecificationsinformationdocumentationhtml-elementsspacingdissectdissectionpininspectanatomycssa11yaccessibility
  Language:TypeScript 12

• mehanix / learnAnatomy

  🩻 Educational software that helps students learn the structure of the human skeleton (Unity, C#)

  anatomybiologybiology-educationeducational-gameeducational-materialseducational-softwaremedicineunityunity3d
  Language:C# 11

• ogonzal87 / oskrhq-uikit

  A collection of UI Elements for rapid design and prototyping.

  anatomybranddesigniconographykitlanguagesystemtypographyvisual-styles
  11

• obophenotype / developmental-stage-ontologies

  Source files for various species-specific stage ontologies

  obofoundryanatomyanatomy-ontologydevelopmental-stagesowlontology
  Language:Makefile 10

• philschatz / anatomy-book

  :orange_book: Anatomy and Physiology Textbook (Openstax)

  textbookopenstaxcc-byanatomyphysiology
  Language:CSS 10

• SWC-Advanced-Microscopy / BakingTray

  Serial-section automated anatomy extension for ScanImage

  microscopyimagingtomography2-photonserial-sectionmatlabscanimageanatomyneuroanatomyneuroscience
  Language:MATLAB 10

• brainglobe / brainrender-docs

  The docs for brainrender https://github.com/brainglobe/BrainRender

  brainrenderneuroscienceanatomydocs
  Language:CSS 9

• obophenotype / zebrafish-phenotype-ontology

  A vocabulary for describing Zebrafish Phenotypes

  ontologyobofoundryanatomy-ontologyanatomydevelopmental-stageszebrafish
  Language:Python 9

• obophenotype / fungal-anatomy-ontology

  A structured controlled vocabulary for the anatomy of fungi

  fungiobofoundryanatomyontologyanatomy-ontology
  Language:Makefile 8

• abel-research / OpenLimb

  An Open-Source, synthetic transtibial residual limb anatomic dataset

  3d-scanninganatomymeshmripcaprincipal-component-analysisprostheticprostheticssouthamptonstatistical-modelstranstibial
  Language:Python 7

• ABRG-Models / Stalefish

  Spatial Analysis of ISH Brain Slice Data

  anatomyneurobiologyneuroscience
  Language:Jupyter Notebook 7

• asemahassan / 3DPuzzleVR

  An individual scientific project, "3D Puzzle VR for Anatomy Education". The project focused on delivering basic knowledge of anatomical models through VR. Using device HTC Vive and its motion controllers to interact with model and its objects.

  unityvirtual-realityhtc-vive3danatomyeducation
  Language:C# 7

• obophenotype / c-elegans-gross-anatomy-ontology

  C. elegans Gross Anatomy Ontology

  obofoundrycaenorhabditis-elegansanatomyontology
  Language:Makefile 7

• obophenotype / porifera-ontology

  An ontology covering the anatomy of Porifera (sponges)

  obofoundryanatomyanatomy-ontologyspongesporiferaontologymetazoaevodevo
  Language:Vue 6

• Modeuser / NeuExplore

  A virtual reality game for neuroscience

  anatomyneuroscienceunity3dvr
  Language:HTML 5

• moueza / Z-Anatomy

  anatomyb3dblenderblender3d
  Language:C# 5

• talkasab / anatomiclocations.org

  Management of a curated set of common tags for anatomic locations for imaging informatics and a basic site describing the project.

  anatomyimaging-informatics
  5