c-elegans

There are 2 repositories under c-elegans topic.

• heyseth / worm-sim

  Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around.

  browserc-elegansconnectomejavascriptsimulation
  Language:JavaScript 362
• wormpose

  iteal / wormpose

  WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

  pythonmachine-learningdeep-learningpose-estimationanimal-pose-estimationtensorflowtensorflow2c-eleganswormsynthetic-dataset-generationsynthetic-imagesneural-networktierpsybehavior-analysiseleganswormposecomputer-vision
  Language:Python 45

• kirkegaardlab / deeptangle

  Code implementation of the detection network capable of dealing with many overlapping spline bodies.

  c-eleganscomputer-visiondeep-learninglatent-spacequantitative-biologysingle-stage-detectorsplines
  Language:Python 34

• ccli3896 / RLWorms

  Setting up C elegans as an RL environment.

  c-elegansneuroscience-methodsreinforcement-learning-environments
  Language:Jupyter Notebook 14

• bozeklab / worm-swin

  Repository for WormSwin: Instance segmentation of C. elegans using vision transformer as appeared in Nature Scientific Reports 2023.

  c-elegansdeep-learningdetectioninstance-segmentationmmdetectionpaperresearchscientific-reportsdataset
  Language:Python 9

• cao13jf / CShaper

  Implementation of CShaper https://doi.org/10.1038/s41467-020-19863-x

  c-elegansdeep-learningsegmentationcell-shape
  Language:Python 8

• Sam-Freitas / LightSaver

  Fluorescent analysis of individualized C. elegans without using neural networks

  caenorhabditis-elegansdata-sciencefluorescencefluorescence-microscopy-imagingmatlabc-eleganscelegans
  Language:MATLAB 6

• raminmh / SIM-CE

  SIM-CE is an advanced, user-friendly modeling and simulation environment in Simulink, for performing multi-scale behavioral analysis of the nervous system of Caenorhabditis elegans (C. elegans).

  simulatorc-elegansbrain-simulatorneuron-simulationsneural-circuits
  3

• codebygarrysingh / astro-worm

  Development and training of advanced machine learning neural models designed to simulate worm cognition in response to the unique stressors of space, such as increased radiation and altered gravity and understand impact on worm behavior and cognition.

  c-eleganslearning-modelmachine-learningneural-networksopenwormpython
  2

• FibonacciDude / CEle

  Bizzare conglomerate of C. Elegans and neuroscience thoughts.

  c-elegansbiological-simulationneuroscience
  Language:Python 2

• TaegonChung / elegansbot

  Newtonian mechanics model for C. elegans locomotion

  eleganskineticslive-demolocomotionmechanicsphysicsphysics-simulationrobotroboticssimulationsimulatorslitherslithering-snakessnakenewtonian-mechanicsc-eleganscaenorhabditis-elegans
  Language:Python 2

• dvettkoe / wormruler

  WormRuler: A video analysis software to analyze body length of Caenorhabditis elegans

  pythonpython3c-eleganswormelegansvideo-analysisvideo-processingbehaviourbehaviour-analysiswormruler
  Language:Python 1

• ekellbuch / arhmm-celegans

  behavioral-analysisc-elegans
  Language:Jupyter Notebook 1

• ivan-ea / celegans_connectome

  caenorhabditis-eleganscaenorhabditiselegansconnectomec-elegans
  Language:Python 1

• Mainakdeb / elegant-embryos

  deep-learning for metadata extraction from the C. elegans embryo

  pytorchdata-visualizationdevelopmental-biologyembryogenesisc-elegans
  Language:Jupyter Notebook 1

• ukalwa / worms-on-paper

  Flexible and disposable paper and plastic-based gel micropads for nematode handling, imaging and chemical testing

  nematodewormsmatlab-image-processing-toolboximage-processingcomputer-visionc-elegansmicrofluidicsdrug-resistance
  Language:MATLAB 1

• vitas19 / TFG_C.Elegans

  Repository of the code created for the Bachelor's Thesis (Trabajo Fin de Grado) of Viktoriya Bohach for the degree on Biomedical Engineering in Universidad Rey Juan Carlos.

  c-eleganscaenorhabditis-eleganscelegansjulia
  Language:Julia