brain-networks

There are 4 repositories under brain-networks topic.

HennyJie / BrainGB
Officially Accepted to IEEE Transactions on Medical Imaging (TMI, IF: 11.037) - Special Issue on Geometric Deep Learning in Medical Imaging.
brain-networks gcn graph-convolutional-networks graph-neural-networks network-embedding pytorch ai4health
Language:MATLAB 157
sheryl-ai / MVGCN
Multi-View Graph Convolutional Network and Its Applications on Neuroimage Analysis for Parkinson's Disease (AMIA 2018)
brain-networks graph-convolutional-networks multi-view-learning metric-learning
Language:Python 97
netneurolab / netneurotools
Useful tools from the Network Neuroscience Lab
brain-networks hacktoberfest neuroimaging python brain-imaging
Language:Python 56
sheryl-ai / MemGCN
Integrative Analysis of Patient Health Records and Neuroimages via Memory-based Graph Convolutional Network (ICDM 2018 full paper)
graph-convolutional-networks health-records brain-networks memory-augmentation memory-network
Language:Python 45
braindynamicslab / dyneusr
Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)
brain-dynamics brain-networks mapper-algorithm neuroimaging topological-data-analysis visualization
Language:Python 44
basiralab / BrainNet-ML-ToolBox
Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.
machine-learning-algorithms machine-learning classification brain-connectivity brain-networks dimensionality-reduction feature-selection feature-extraction data-processing brain-disorders
Language:Python 38
neural-flows
brain-modelling-group / neural-flows
Estimation, analysis and decomposition of brainwave spatiotemporal dynamics
neural-flows brainwaves brain-networks meg fmri-analysis spatiotemporal-data-analysis spatiotemporal-dynamics
Language:MATLAB 26
basiralab / DGN
How to fuse a population of graphs into a single one using graph neural networks?
brain-networks cbt brain-connectivity geometric-deep-learning network-integration network-fusion network-analysis machine-learning-algorithms brain-gnn graph-integration graph-fusion graph-neural-networks gnn atlas-learning
Language:Python 22
Owen-Yang-18 / BrainNN-PreTrain
Implementations for CHIL 2023 paper ''PTGB: Pre-Train Graph Neural Networks for Brain Network Analysis'' and KDD 2022 paper ''Data-Efficient Brain Connectome Analysis via Multi-Task Meta-Learning''
brain-networks contrastive-learning graph-neural-networks meta-learning pre-training
Language:Python 11
mychan24 / r-for-brain-network
Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks
cognitive-neuroscience brain-networks r-programming r-ladies
Language:HTML 10
basiralab / MGN-Net
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
graph-normalizer biological-networks multiview-networks multigraph graph-integration data-fusion data-integration brain-networks brain-connectivity connectomes network-neuroscience graph-neural-networks
Language:Python 9
favour-nerrise / xGW-GAT
An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment
ai4health brain-imaging brain-networks classification connectome gat graph-attention-networks graph-neural-networks parkinsons-disease pytorch pytorch-geometric rsfmri symmetric-positive-definite gait-impairment
Language:Python 9
basiralab / MultigraphGNet
Predicting multigraph brain population from a single graph
graph-augmentation brain-connectivity connectomics deep-learning geometric-deep-learning gnn graph-neural-networks medical-dataset multigraph-generation network-neuroscience predictive-learning brain-networks generative-learning brain-mapping network-analysis
Language:Python 8
basiralab / 4D-FedGNN-Plus
Federating temporally-varying graph timeseries
gnn graph-neural-networks temporal-data timeseries-forecasting 4d-gnn brain-connectivity brain-networks federated-learning generative generative-learning graph-synthesis missing-data network-neuroscience
Language:Jupyter Notebook 7
basiralab / ABMT
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
morphological-brain-multiplexes brain-graph-translation predicting-brain-multiplexes brain-network geometric-deep-learning graph-generation graph-embedding multiplex data-generation predictive-learning predictive-intelligence gender-classification brain-connectivity brain-networks connectome gan generative-adversarial-network
Language:Python 7
basiralab / FS-Select
FS-Select identifies the best feature selection (FS) method for a given dataset from a pool of FS methods.
feature-selection machine-learning reproducibility biomarker-discovery brain-networks brain-disorders pattern-recognition classification
Language:Jupyter Notebook 6
basiralab / netNorm-PY
netNorm (network normalization) framework for multi-view network integration (or fusion), recoded up in Python by Ahmed Nebli.
network-fusion network-normalization network-integration sample-selection brain-connectivity network-neuroscience biomarker-discovery multi-view-networks multigraph-integration multigraph-fusion connectome-mapping brain-networks high-order-connectivity brain-disorders
Language:Python 5
HySonLab / TWGNN
Fast Temporal Wavelet Graph Neural Networks
brain-networks graph-neural-networks matrix-factorization temporal-graph-learning wavelet-transform traffic-prediction
Language:Python 5
mychan24 / system-segregation-and-graph-tools
System segregation (see Chan et al. 2014 PNAS) and RSFC brain network tools
cognitive-neuroscience brain-networks resting-state-fmri
Language:MATLAB 5
brain-modelling-group / stochastic-sync
Code supporting 'Stochastic synchronization of dynamics on the human connectome'
neuroscience modeling brain-networks oscillations
Language:MATLAB 4
braindynamicslab / neumapper
A scalable Mapper algorithm for neuroimaging data analysis
neuroimaging topological-data-analysis brain-networks brain-dynamics mapper-algorithm
Language:MATLAB 4
topolearn / topo-loss
Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)
brain-networks heritability permutation-test persistent-homology topological-data-analysis wasserstein-distance birth-death-decomposition
Language:C++ 4
basiralab / IMANGraphNet
Non-isomorphic Inter-modality Graph Alignment and Synthesis.
deep-learning deep-neural-networks graph-neural-networks graph-superresolution super-resolution graph-alignment domain-alignment brain brain-connectivity brain-networks network-neuroscience generative-learning predictive-medicine inter-modality-learning functional-mri structural-mri pytorch-geometric connectome-generation
Language:Python 3
basiralab / RESNets
Residual Embedding Similarity-based Network Selection (RESNets) for forecasting network dynamics.
resnets evolution-trajectories brain-networks adversarial-connectome-embedding connectional-brain-template cbt graph-embedding geometric-deep-learning network-neuroscience residual-learning similarity-learning sample-selection machine-learning deep-learning
Language:Python 3
basiralab / SM-netFusion
SM-NetFusion for supervised multi-topology network cross-diffusion.
network-fusion graph-topology network-integration brain-networks brain-connectivity network-neuroscience machine-learning supervised-learning clustering network-atlas graph-diffusion sm-netfusion graph-data computer-aided-diagnosis autism-spectrum-disorder
Language:MATLAB 3
basiralab / L2S-KDnet
L2S-KDNet for super-resolving brain graphs using teacher-student network
teacher-student-learning graph-neural-networks brain-networks brain-connectivity domain-alignment superresolution knowledge-distillation
Language:Python 2
brain-modelling-group / geomsurr
Generate random surrogate weighted networks that preserve the effect of distance on the weights.
connectome brain-networks geometry graph-theory neuroimaging
Language:MATLAB 2
lmeliega / MorphoConnect
MATLAB Toolbox for studying Brain Networks of anatomical/functional covariance.
network-analysis brain-networks alzheimer-disease matlab-toolbox
Language:MATLAB 2
rq-Chen / rq-Chen.github.io
Ruiqi's personal website
brain-networks cognitive-neuroscience phd-application
Language:HTML 2
tommasomenara / functional_control
Repository of the code used for the paper "Functional Control of Oscillator Networks"
matlab brain power-network brain-networks oscillators control-systems
Language:MATLAB 2
alruizzo / A-MTL
Analysis scripts used to analyze the local and global functional connectivity of the medial temporal lobe including the amygdala ('A-MTL') described in Ruiz-Rizzo et al. (2020), NeuroImage.
functional-connectivity resting-state-fmri brain-networks medial-temporal-lobe amygdala
Language:Shell 1
alruizzo / interFC
Between-network functional connectivity across frequency bins described in Küchenhoff et al. (2021), European Journal of Neuroscience.
functional-connectivity frequency-bins resting-state-fmri brain-networks
Language:MATLAB 1
basiralab / TIS-Net
Intermodalitty graph superresolution.
super-resolution superresolution deep-graph-normalizer graph-neural-networks graph-convolutional-networks brain-connectivity brain-networks connectional-brain-template template-based-learning one-shot-learning graph-superresolution
Language:Python 1
laplcebeltrami / sphericalMDS
Embedding of Functional Human Brain Networks on a Sphere
brain-networks hyperbolic-mds spherical-mds
Language:MATLAB 1
pclus / transverse-instabilities
Code and data of the paper Clusella et al. "Complex spatiotemporal oscillations emerge from transverse instabilities in large-scale brain networks" (2023) https://doi.org/10.1371/journal.pcbi.1010781
auto-07p bifurcation-analysis brain-networks computational-neuroscience neural-dynamics nonlinear-dynamics simulations
Language:C 1
smlacava / Horme
HORME: Handler for the Observable Rotating Motion of the Encephalos
brain brain-visualization electrodes eeg ieeg brain-connectivity matlab 3d brain-imaging eeg-headset brain-networks
Language:MATLAB 1

brain-networks

HennyJie / BrainGB

sheryl-ai / MVGCN

netneurolab / netneurotools

sheryl-ai / MemGCN

braindynamicslab / dyneusr

basiralab / BrainNet-ML-ToolBox

brain-modelling-group / neural-flows

basiralab / DGN

Owen-Yang-18 / BrainNN-PreTrain

mychan24 / r-for-brain-network

basiralab / MGN-Net

favour-nerrise / xGW-GAT

basiralab / MultigraphGNet

basiralab / 4D-FedGNN-Plus

basiralab / ABMT

basiralab / FS-Select

basiralab / netNorm-PY

HySonLab / TWGNN

mychan24 / system-segregation-and-graph-tools

brain-modelling-group / stochastic-sync

braindynamicslab / neumapper

topolearn / topo-loss

basiralab / IMANGraphNet

basiralab / RESNets

basiralab / SM-netFusion

basiralab / L2S-KDnet

brain-modelling-group / geomsurr

lmeliega / MorphoConnect

rq-Chen / rq-Chen.github.io

tommasomenara / functional_control

alruizzo / A-MTL

alruizzo / interFC

basiralab / TIS-Net

laplcebeltrami / sphericalMDS

pclus / transverse-instabilities

smlacava / Horme