functional-connectivity
There are 5 repositories under functional-connectivity topic.
- dyconnmapLanguage:Python 109
raamana / neuropredict
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
Language:Python 103- frites
brainets / frites
Framework for Information Theoretical analysis of Electrophysiological data and Statistics
Language:Python 95 INM-6 / multi-area-model
A large-scale spiking model of the vision-related areas of macaque cortex.
Language:Python 76- Language:Python 43
kundaMwiza / fMRI-site-adaptation
Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity (TMI, 2022)
Language:HTML 37schw4b / DGM
Dynamical graphical models for multivariate time series data to estimate directed dynamic relationships in networks.
Language:R 25- Language:MATLAB 21
EsiSeraj / ERP_Connectivity_EMG_Analysis
Essential Motor Cortex Signal Processing MATLAB Toolbox which implements various methods for three major aspects of investigating human motor cortex from Neuroscience view point: (1) ERP estimation and quantification, (2) Cortical Functional Connectivity analysis and (3) EMG quantification
event-related-potentialserpevent-related-synchronizationersevent-related-desynchronizationerderp-time-dynamicstime-frequency-analysiscortical-functional-connectivityfunctional-connectivitybrain-computer-interfacebrain-connectivityelectroencephalogrameegelectromyogramemgemg-quantificationmatlab-functionsfree-toolboxuser-manualLanguage:MATLAB 17Eden-Kramer-Lab / GLM-CFC
A GLM based approach to measure CFC
Language:MATLAB 16dmascali / fmri_denoising
Collection of Matlab functions for denoising fMRI data
Language:MATLAB 13- Language:Python 11
- Language:Python 10
SripadaLab / Predictive_Modeling_Reliability_HCP
Supporting code for https://www.biorxiv.org/content/10.1101/796714v4
Language:Jupyter Notebook 9pni-lab / connattractor
Connectome-based Hopfiled Neural Networks (fcHNN)
Language:Jupyter Notebook 8lazyjiang / Stroke-EEG-Brain-network-analysis
Functional connectivity and brain network analysis for motor imagery data in stroke patients
Language:Python 7OnnoKampman / FCEst
Methods for estimating time-varying functional connectivity (TVFC)
Language:Python 7SMLudwig / EEGminer
EEGminer: Discovering Interpretable Features of Brain Activity with Learnable Filters
Language:Python 7- BWAS_comment
spisakt / BWAS_comment
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
Language:Jupyter Notebook 7 - TMFC_toolbox
Masharipov / TMFC_toolbox
TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.
Language:MATLAB 6 Hui-Ling / BeamformerSourceImaging
Brainstorm plug-ins for MEG and EEG source imaging, including (1) maximum contrast beamformer (MCB) for the use in localization of brain sources, (2) spatiotemporal imaging of linearly-related source components (SILSC) for the use in identification of sources linearly correlated to the activity of a seed, and (3) beamformer-based imaging of phase-amplitude coupling (BIPAC) for the use in identification of sources coupled to seed activity.
Language:MATLAB 5nabilalibou / connectivity_segmentation
Track and segment the dynamics of brain connectivity networks
Language:Python 5PSYMARKER / leida-matlab
Leading Eigenvector Dynamics Analysis Matlab Toolbox
Language:MATLAB 5AnTiMaTteR23 / adhd-model
A machine learning model to diagnose ADHD, using resting-state fMRI data.
Language:Python 4WheelockLab / MachineLearning_NetworkLevelAnalysis
Machine learning pipelines with K-fold cross-validation library for FC data
Language:MATLAB 4aliobaibk / nnamm
Data and codes supporting the manuscript "Dialogue mechanisms between astrocytic and neuronal networks: a whole-brain modelling approach" by Ali et al., 2025, PCBI.
Language:HTML 3ColeLab / controlCartography
Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.
Language:Jupyter Notebook 3- Language:MATLAB 3
- TMFC_toolbox
IHB-IBR-department / TMFC_toolbox
TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.
Language:MATLAB 3 kchardon / adhd_brain_functional_connectivity
Work did at the end of my internship, based on Nastaran Hamedi et al. Detecting ADHD Based on Brain Functional Connectivity Using Resting-State MEG Signals
Language:Jupyter Notebook 3- Language:C++ 3
mccarthy-m-g / mccarthy_EEGNetworkVariants_2024
Materials and source code for my MSc thesis: "Studying Network Variants With Electroencephalography"
Language:R 3Benchmarks for functional connectivity estimators and FCEst Python package
Language:Python 3- BOLD_deconvolution
BOLD signal deconvolution based on ridge regression. Can be used to calculate psycho-physiological interaction (PPI) at the neuronal level. Python and MATLAB functions recover neuronal time series, similar to the Parametric Empirical Bayes (PEB) approach implemented in SPM12 (spm_peb_ppi.m).
Language:Jupyter Notebook 2 UAIBC-Brain / Local-SC-FC-coupling-pattern
For local SC-FC subgraph extraction and counterfactual explanation.
Language:Python 2vmadanmohan / EWC
Code to compute the Event-marked Windowed Communication (EWC) from neural time series.
Language:MATLAB 2
