functional-connectivity

There are 4 repositories under functional-connectivity topic.

raamana / neuropredict
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
neuroimaging machine-learning structural-imaging anatomical-mri cross-validation functional-connectivity tractography tract-based-statistics resting-state pattern-recognition easy-to-use report nilearn scikit-learn
Language:Python 99
dyconnmap
makism / dyconnmap
A dynamic connectome mapping module in python.
neuroimaging eeg fmri meg connectivity time-varying graphs fc-states dynamic functional-connectivity graph-analysis connectome python graph-distances clustering neuroscience
Language:Python 97
frites
brainets / frites
Framework for Information Theoretical analysis of Electrophysiological data and Statistics
information-theory electrophysiological-data statistics group-level rfx ffx gaussian-copula cluster-based neurophysiological-data functional-connectivity brainweb brainhack institut-neurosciences-timone brainhack-marseille
Language:Python 75
INM-6 / multi-area-model
A large-scale spiking model of the vision-related areas of macaque cortex.
full-scale multi-area predictive-connectomics functional-connectivity theoretical-neuroanatomy simulation primates computational-neuroscience cerebral-cortex connectivity neural-network
Language:Python 70
IBT-FMI / SAMRI
Small Animal Magnetic Resonance Imaging via Python.
biomedical fmri functional-connectivity dwi bids fsl neuroimaging small-animals rodent registration
Language:Python 42
kundaMwiza / fMRI-site-adaptation
Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity (TMI, 2022)
autism-spectrum-disorder fmri-data-analysis domain-adaptation functional-connectivity
Language:HTML 28
schw4b / DGM
Dynamical graphical models for multivariate time series data to estimate directed dynamic relationships in networks.
functional-connectivity dynamic-graphical-models time-varying-connectivity
Language:R 23
happytudouni / SourceSpaceFCAnalysis_DCN
eeg functional-connectivity source-analysis
Language:MATLAB 17
Eden-Kramer-Lab / GLM-CFC
A GLM based approach to measure CFC
cross-frequency-coupling time-series generalized-linear-models neuroscience functional-connectivity frequency-domain
Language:MATLAB 15
EsiSeraj / ERP_Connectivity_EMG_Analysis
Essential Motor Cortex Signal Processing MATLAB Toolbox which implements various methods for three major aspects of investigating human motor cortex from Neuroscience view point: (1) ERP estimation and quantification, (2) Cortical Functional Connectivity analysis and (3) EMG quantification
brain-computer-interface brain-connectivity cortical-functional-connectivity eeg electroencephalogram electromyogram emg emg-quantification erd erp erp-time-dynamics ers event-related-desynchronization event-related-potentials event-related-synchronization free-toolbox functional-connectivity matlab-functions time-frequency-analysis user-manual
Language:MATLAB 15
dmascali / fmri_denoising
Collection of Matlab functions for denoising fMRI data
censoring compcor fmri framewise-displacement functional-connectivity resting-state
Language:MATLAB 12
feilong / IDM_pred
The neural basis of intelligence in fine-grained cortical topographies
functional-connectivity hyperalignment individual-differences intelligence mvpa
Language:Python 10
SripadaLab / Predictive_Modeling_Reliability_HCP
Supporting code for https://www.biorxiv.org/content/10.1101/796714v4
predictive-models test-retest-reliability fmri functional-connectivity
Language:Jupyter Notebook 9
5a7man / eeg_fConn
Python library to compute functional connectivity measures from EEG
coherence computational-neuroscience cross-correlation eeg eeg-analysis eeg-signals functional-connectivity neuroscience phase-lag-index phase-locking-value python3 imaginary-coherence
Language:Python 8
BWAS_comment
spisakt / BWAS_comment
Project repository of the Matters Arising commentary "Multivariate BWAS can be replicable with moderate sample sizes in some cases""
functional-connectivity mri multivariate-statistics predictive-modeling sample-size bwas
Language:Jupyter Notebook 6
pni-lab / connattractor
Connectome-based Hopfiled Neural Networks (fcHNN)
computational-neuroimaging fmri functional-connectivity hopfield-neural-network
Language:Jupyter Notebook 5
Hui-Ling / BeamformerSourceImaging
Brainstorm plug-ins for MEG and EEG source imaging, including (1) maximum contrast beamformer (MCB) for the use in localization of brain sources, (2) spatiotemporal imaging of linearly-related source components (SILSC) for the use in identification of sources linearly correlated to the activity of a seed, and (3) beamformer-based imaging of phase-amplitude coupling (BIPAC) for the use in identification of sources coupled to seed activity.
bipac mcb silsc meg eeg beamformer seed inverse-problems functional-connectivity brainstorm neuroimaging
Language:MATLAB 4
OnnoKampman / FCEst
Methods for estimating time-varying functional connectivity (TVFC)
brain-connectivity connectome dynamic-conditional-correlation dynamic-functional-connectivity fcest fmri functional-connectivity gaussian-processes gpflow machine-learning mgarch network-neuroscience neuroimaging nilearn python sliding-windows time-varying-connectivity wishart-processes
Language:Python 4
ColeLab / controlCartography
Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.
network-science-cartography network-science cognitive-control computational-neuroscience functional-connectivity network-dynamics network-interactions cognitive-flexibility network-metrics neural-networks neuroimaging fmri brain-connectivity
Language:Jupyter Notebook 3
grundm / graphCA
Code to run and analyze fMRI study of somatosensory detection task
mri-data functional-connectivity network-analysis somatosensory perception graph-theory
Language:MATLAB 3
makism / brainnets
a simple C++ graph analysis library
graph-analysis functional-connectivity fmri neuroimaging cpp qmake
Language:C++ 3
PSYMARKER / leida-matlab
Leading Eigenvector Dynamics Analysis Matlab Toolbox
fmri functional-connectivity resting-state unsupervised-learning
Language:MATLAB 3
WheelockLab / MachineLearning_NetworkLevelAnalysis
Machine learning pipelines with K-fold cross-validation library for FC data
cross-validation functional-connectivity machine-learning network-analysis
Language:MATLAB 3
AnTiMaTteR23 / adhd-model
A machine learning model to diagnose ADHD, using resting-state fMRI data.
adhd fmri functional-connectivity keras-tensorflow machine-learning
Language:Python 2
htwangtw / sbfc
Seed-based resting-state functional connectivity with Nilearn.
brainweb fmri functional-connectivity neuroimaging nilearn resting-state-fmri
Language:Python 2
5a7man / Machine_learning_evaluates_changes_in_functional_connectivity_under_a_prolonged_cognitive_load
Source code of "Machine learning evaluates changes in functional connectivity under a prolonged cognitive load"
computational-neuroscience eeg eeg-analysis feature-engineering functional-connectivity interpretable-machine-learning machine-learning mne-python neuroscience python statistics svm
Language:Python 1
alruizzo / A-MTL
Analysis scripts used to analyze the local and global functional connectivity of the medial temporal lobe including the amygdala ('A-MTL') described in Ruiz-Rizzo et al. (2020), NeuroImage.
amygdala brain-networks functional-connectivity medial-temporal-lobe resting-state-fmri
Language:Shell 1
FrancescoInnocenti / fc-simulations
Simulations of different functional connectivity measures.
computational-neuroscience functional-connectivity granger-causality
Language:Python 1
HNXJ / NeuroPy
A developing toolbox for data analysis and signal processing for Neuroscience on Python
neuroscience signal-processing data-science deep-neural-networks functional-connectivity
Language:Jupyter Notebook 1
janarez / brain-connectivity
ML on FC matrices. Supporting code for diploma thesis at Charles Uni.
brain-connectivity fmri-data-analysis functional-connectivity
Language:Jupyter Notebook 1
marccolomer / LAEEG_WB
Scripts to calculate InterSite Phase Clustering (ISPC) over time for the paper "Action experience in infancy predicts visual-motor functional connectivity during action anticipation". The scripts include ways of calculating whole-brain connectivity and connectivity between specific clusters or electrodes. The scripts also show examples of how to calculate ISPC-trial and wPLI.
eeg-analysis functional-connectivity infancy ispc whole-brain
Language:MATLAB 1
Masharipov / TMFC_toolbox
TMFC toolbox - a new SPM toolbox for whole-brain task-modulated functional connectivity (TMFC) analysis with user-friendly graphical interface.
brain-connectivity fmri functional-connectivity psychophysiological-interaction spm12
Language:MATLAB 1
mccarthy-m-g / mccarthy_EEGNetworkVariants_2024
Materials and source code for my MSc thesis: "Studying Network Variants With Electroencephalography"
eeg emmeans flextable functional-connectivity glmmtmb individual-differences mne-python msc-thesis neuroimaging neuroscience officer python r research reticulate rmarkdown rstats targets tidyverse
Language:R 1
nabilalibou / connectivity_segmentation
Track and segment the dynamics of brain connectivity networks
connectivity eeg eeg-analysis functional-connectivity kmeans-clustering microstates
Language:Python 1
OnnoKampman / FCEst-benchmarking
Benchmarks for functional connectivity estimators and FCEst Python package
benchmarking dynamic-functional-connectivity fcest fmri functional-connectivity machine-learning network-neuroscience neuroimaging time-varying-connectivity
Language:Python 1
orhansoyuhos / rMEG-FEF-vs-IFJ
The analysis pipeline for our paper 'Functional connectivity fingerprints of the frontal eye field and inferior frontal junction suggest spatial versus nonspatial processing in the prefrontal cortex'.
visual-attention brain-connectivity dorsal-stream frontal-eye-field functional-connectivity inferior-frontal-junction prefrontal-cortex ventral-stream working-memory visual-pathways
Language:MATLAB 1