bidsapp

There are 0 repository under bidsapp topic.

• connectomemapper3

  connectomicslab / connectomemapper3

  Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

  bidsbidsappdmrifmriconnectomebids-appspipelineschuvbrainparcellationpythoneegdockersingularity
  Language:HTML 66

• bids-apps / MRtrix3_connectome

  Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

  bidsbidsappdiffusion-mrimri
  Language:Python 48

• bids-apps / freesurfer

  BIDS app wrapping recon-all from FreeSurfer

  bidsbidsappanatomical-mrimripreprocessing
  Language:Python 40

• bids-apps / HCPPipelines

  A BIDS App for minimal preprocessing using the HCP Pipelines

  bidsbidsappanatomical-mrifunctional-mrimripreprocessing
  Language:Python 32

• bids-apps / rsHRF

  Resting state HRF estimation from BOLD-fMRI signal

  timeseriesfmri-data-analysisfmribidsbidsapp
  Language:Python 31

• bids-apps / CPAC

  BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

  bidsbidsappmripreprocessing
  Language:Python 14

• bids-apps / hyperalignment

  Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

  bidsbidsapp
  Language:Python 14

• bids-apps / SPM

  BIDS App containing an instance of the SPM software.

  bidsspmbidsapp
  Language:MATLAB 14

• nidea1 / e-Auction

  A Django(backend) & React(frontend) based full-stack real time auction application

  djangoreactauctionauction-websitee-commercefull-stackonlineauction-appsbiddingbidsbids-appsbidsappdrfdrf-jwtecommerce
  Language:JavaScript 14

• bids-apps / baracus

  Predicts brain age, based on data from Freesurfer 5.3

  bidsbidsapp
  Language:Python 9

• bids-apps / BrainSuite

  BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

  mrimri-analysisbidsbidsapp
  Language:Python 9

• DCAN-Labs / infant-abcd-bids-pipeline

  Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  bidsappdockerfile
  Language:Python 8

• bids-apps / PyMVPA

  runs MVPA and RSA analysis BIDS bold derivative data

  bidsbidsappmultivariate-pattern-analysismvpasimilarity-analysis
  Language:Python 7

• bids-apps / BROCCOLI

  BIDS App for BROCCOLI

  bidsbidsappmri
  Language:Dockerfile 6

• bids-apps / rs_signal_extract

  BIDS App for resting state signal extraction using nilearn.

  bidsbidsappresting-state-fmri
  Language:Python 6

• bids-apps / ndmg

  BIDS app for NeuroData's MRI to Graphs pipeline

  diffusion-mriconnectomicsdocker-containersingularity-containerbidsbidsapp
  Language:Dockerfile 5

• bids-apps / nipypelines

  Preprocess functional tasks in a BIDS dataset.

  bidsbidsapp
  Language:Python 5

• bids-apps / oppni

  runs fast optimization of preprocessing pipelines for BOLD fMRI

  bidsbidsappfunctional-mrimri
  Language:Shell 5

• bids-apps / QAP

  PCP Quality Assessment Protocol

  bidsbidsappquality-control
  Language:Python 5

• brainhack-ch / superres-mri

  Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution

  nipypebids-formatbidsappneuroimagingsuper-resolutionslice-to-volumemrifetalopengeneva2019brainhack-globalbrainhack
  Language:Jupyter Notebook 5

• cpp-lln-lab / bidsMReye

  BIDS app using deepMReye to decode eye motion for fMRI time series data.

  bidseye-trackingclosemberbidsapp
  Language:Python 5

• bids-apps / mindboggle

  Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data

  bidsbidsappmri
  Language:Python 4

• bids-apps / niak

  Pipeline for preprocessing of fMRI and structural MRI scans

  bidsbidsapp
  Language:MATLAB 4

• cpp-lln-lab / bidspm

  an SPM centric BIDS app

  bidsfmrispm12pipelineautomated-analysisclosemberbidsapp
  Language:MATLAB 4

• bids-apps / tracula

  implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

  bidsbidsappdiffusion-mri
  Language:Python 3

• bids-apps / brainiak-srm

  This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK

  bidsbidsapp
  Language:Python 1

• bids-apps / aa

  BIDS App containing an instance of the Automatic Analysis

  bidsbidsapp
  Language:Dockerfile

• bids-apps / antsCorticalThickness

  BIDS App for calculating cortical thickness using ANTs

  bidsbidsapp
  Language:Python

• bids-apps / SnPM

  BIDS App containing an instance of the SnPM software.

  bidsbidsappspm
  Language:MATLAB