APL BRAIN

dotmotif

A performant, powerful query framework to search for network motifs

grand

Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.

npyjs

Read numpy .npy files in JavaScript

grand-cypher

Implementation of the Cypher language for searching NetworkX graphs

grandiso-networkx

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

saber

bossdb_cookbook

The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.

substrate

A high-speed three.js substrate for visualizing biofidelic data

colocar

tools for sparse human annotation of three-dimensional [neuroscience] datasets

mesh-deco

A Python-based utility for distributed meshing.

BENCHMARK-Metadata

Metadata specification and upload instructions for BossDB images, experiments, and annotations

grandlite

A SQLite-like tool for querying graphs from the command-line using graph query languages in in-memory Python.

neuvue-client

python client for neuvue-queue

bossphorus

A BossDB-like volumetric datastore in Rust

grand-cypher-io

neuvue-app

MICrONS Proofreading App

neuvue-manage

Resources and documentation to create and manage proofreading tasks on NeuVue

neuvue-queue

workflow-calcium-imaging

Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p

mb_gen_replay

Mushroom Body Generative Replay

bossdb-collab-notebooks

Collection of public notebooks for all projects on BossDB

MB_Point_Attractor

Code supporting paper "Recurrent connections enable point attractor dynamics and dimensionality reduction in a connectome-constrained model of the insect learning center"

neuPrint-Build-Update

Scripts to create files to build a neuPrint database

neuprint-cm

neuPrintExplorer

View connectomic data stored in neuPrint

neuPrintHTTP

Implements connectomics REST interface

neurodatarehack2023

APL Team's project for NeurodataRehack 2023 event hosted by NWB

neuroglancer

WebGL-based viewer for volumetric data

neuroworkflows-demo

INCF Assembly 2023 Demonstration of Neuroworkflows

reconstruct2stack

A Python library to convert Reconstruct or PyReconstruct segmentation contours to image mask stacks.