APL BRAIN

grand

Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.

grand-cypher

Implementation of the Cypher language for searching NetworkX graphs

npyjs

Read numpy .npy files in JavaScript

dotmotif

A performant, powerful query framework to search for network motifs

grandiso-networkx

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

grandlite

A SQLite-like tool for querying graphs from the command-line using graph query languages in in-memory Python.

tamarind

manage multiple ephemeral neo4j containers

neuromorpholib

neuvue-client

python client for neuvue-queue

dandi-archive

EMBER - DANDI API server and Web app

bossdb-collab-notebooks

Collection of public notebooks for all projects on BossDB

bossdb-rag-chatbot

A Language Interface to the BossDB Ecosystem

EMAnnotationSchemas

Repository to hold schemas for annotations of volumetric imaging data focused on EM

motifstudio

neuroglancer

WebGL-based viewer for volumetric data

neuvue-app

MICrONS Proofreading App

neuvue-queue

pyreconstruct-download

Tiny website + example code for downloading a subvolume for annotation in PyReconstruct

vsvi2precomputed

Script to convert VSVI (used in VAST) image datasets to precomputed volumes

bossdb-kasthuri-challenge

Segmentation challenge for the Kasthuri et. al 2015 dataset

campfire

Complementary Automated Methods for Proofreading

dandi-docs

EMBER-DANDI Documentation

dandi-infrastructure

A repository to collect docs/issues on DANDI project infrastructure for Ember

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

grandiso-rust

motifstudio-client

ndx-wearable-extension

A template for creating Neurodata Extensions for wearable sensors

neuVid

Generates neuroscience videos from high-level descriptions using Blender.

open-data-registry

A registry of publicly available datasets on AWS

PyChunkedGraph

Data backend for fast proofreading of cell segmentations in connectomics datasets