BrainGlobe's repositories
brainrender
a python based software for visualization of neuroanatomical and morphological data.
cellfinder
Automated 3D cell detection in very large images
brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
cellfinder-core
Standalone cellfinder cell detection algorithm
brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
bg-atlasgen
Tools for packaging atlases for use with BrainGlobe
brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
brainglobe-meta
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
brainglobe.github.io
brainglobe.info website
probeplanner
Helps plan where to put things in brains
BrainGlobe
General information, resources and dicussions for the BrainGlobe project.
brainglobe-registration
Registration to BrainGlobe atlases in napari using Elastix
brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
brainglobe-space
Anatomical space conventions made easy.
brainglobe-template-builder
Build unbiased anatomical templates from individual images
brainglobe-utils
Shared general purpose tools for the BrainGlobe project
brainglobe-stitch
A napari plugin for stitching large tiled 3D imaging datasets
course-dec-2023
Materials for the BrainGlobe & napari course at the Sainsbury Wellcome Centre
stack-to-chunk
Convert stacks of images to chunked datasets