physiology

There are 4 repositories under physiology topic.

• NeuroKit

  neuropsychology / NeuroKit

  NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing

  pythonecgedaemgeegppgsignalphysiologybiosignalsscrskin-conductanceheart-ratehrvtutorialsignal-processingcardiacsoftwareeogentropyhacktoberfest
  Language:Python 1404

• neuropsychology / NeuroKit.py

  A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

  biosignalspythoneegedaneurosciencemicrostateshrvrsaheart-rateecgphysiologyneurophysiologycomplexityentropyfractal-dimensionneuropsychologypsychologyemgbvpppg
  Language:Python 360

• ismorphism / DeepECG

  ECG classification programs based on ML/DL methods

  ecg-classificationmit-bhdatasetelectrode-voltage-measurementspythoncinc-challengeecgdeep-learningkerastensorflowcardioconvolutional-neural-networksrecurrent-neural-networksphysiologyphysiological-signalsheart-rateqrsneural-networkbioinformaticschemoinformatics
  Language:Python 235

• forrestbao / pyeeg

  Python + EEG/MEG = PyEEG

  pythonseriesmegpython-eegeegphysiology
  Language:Python 234

• danmcduff / iphys-toolbox

  A MATLAB toolbox for iPPG analysis. The toolbox includes implementations of commonly used methods.

  toolboxvideophysiology
  Language:MATLAB 184

• Chaste / Chaste

  Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

  mathematical-modellingmathematical-biologycomputational-biologycell-basedelectrophysiologyhpc-applicationsphysiologycancer-researchdevelopmental-biologyc-plus-plus
  Language:C++ 115

• swharden / pyABF

  pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

  electrophysiologyneuroscienceabfphysiologyneuronhacktoberfesthacktoberfest2022
  Language:Jupyter Notebook 97
• pymuscle

  iandanforth / pymuscle

  A motor unit based model of skeletal muscle and fatigue

  machine-learningagent-based-simulationneurosciencephysiology
  Language:Python 60

• Gabrock94 / Pysiology

  A Python package for physyological's signals processing

  pythonphysiologyphysiological-signalssignal-processingecgecg-signalemgemg-signaledagsrelectrophysiologyelectrophysiological-data
  Language:Python 58
• phys2bids

  physiopy / phys2bids

  Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

  bidsphysiological-signalsphysiologypython3-libraryphysiological-recordingslabchartacqknowledgebrainwebhacktoberfestclosember
  Language:Python 56
• CellMLToolkit.jl

  SciML / CellMLToolkit.jl

  CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.

  cellmlsystems-biologydifferential-equationsjuliaodephysiologyscientific-machine-learningsciml
  Language:Julia 54

• revanurambareesh / instantaneous_transformer

  Official repo of Instantaneous Transformers for Video based Physiology estimation (Accepted to AAAI workshop and Springer Studies in Computational Intelligence)

  deep-learningcomputer-visionmachine-learningresearchtransformersconvolutional-neural-networkshuman-computer-interactionphysiologypytorchinstantaneous-transformer
  Language:Python 20

• EOA-team / sentinel2_crop_traits

  Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)

  chlorophyllleaf-area-indexphenologyphenotypingphysiologyremote-sensingsentinel-2
  Language:Python 18
• openhdemg

  GiacomoValliPhD / openhdemg

  A powerful toolbox for the analysis of HD-EMG recordings

  electromyogramelectromyographymusclemuscle-activityphysiologyhigh-density-emgmotor-unitsmotor-units-properties
  Language:Python 17

• SMARTlab-Purdue / ros2-foxy-wearable-biosensors

  This repository is a new wearable biosensors package for ROS2-Foxy. The ultimate goal of this repo is to expand the biosensors ecosystem in the Human-Robot Interaction (HRI) field. The package currently supports six wearable biosensors that can be used in HRI researches without behavioral constraints caused by limited hardware specifications (e.g., wired devices). We will keep updating this GitHub to support various wearable sensors on ROS 2 system. If you are interested in this project, please contact us.

  ros2ros2-foxybiosensorsbiosensorphysiologywearable-devicesaffective-computingcognitive-scienceroboticscognitive-roboticsaffective-roboticsbiosignalros2-foxy-biosensor
  Language:Python 16

• aaron-schroeder / heartandsole

  Python library for analysis of running data files

  fitantfit-sdkfitanalysisrunningintensitygarmintrainingpeaksstravagovssphysiology
  Language:Python 12

• ngebodh / GX_tES_EEG_Physio_Behavior

  Supporting code for the GX Dataset

  eegecgneurosciencephysiologyspectrogramdataseteeg-signalseeg-analysiseeg-dataecg-signalneuromodulationphysiological-dataphysiological-signalsbehaviorbehavioral-analyticsheart-ratetdcstacs
  Language:HTML 12

• philschatz / anatomy-book

  :orange_book: Anatomy and Physiology Textbook (Openstax)

  textbookopenstaxcc-byanatomyphysiology
  Language:CSS 11

• bccummings / acq-tools

  Toolkit for analyzing physiologic data collected via Biopac AcqKnowledge software.

  biopacdata-acquisitionresearch-data-managementphysiologyhealth-informaticsbiomedical-data-sciencebiomedical-engineering
  Language:Python 9

• Nikeshbajaj / phyaat

  PhyAAt: Physiology of Auditory Attention - Processing Library

  auditory-attentionphysiologyphysiology-auditory-attentioneeggsrppgbrainwaveeeg-signalseeg-analysiscognitive-psychologygalvanic-skin-responseheart-ratemachine-learningdeeplearningeeg-dataset
  Language:Python 8

• flintproject / Flint

  A simulator for biological and physiological models

  simulatorbiologyphysiologycellmlphmlsbmlodesde
  Language:C++ 6

• LucaCerina / physio-cassette

  Storage structures for signals, metadata and event annotations

  physiologysignalsstorage
  Language:Python 6

• pipetcpt / DallphinAtoM

  Drugs with Allometry and Physiology Inside - Animal to huMan

  allometryphysiology
  6

• plantphys / gsti

  A project focused on the development of generalized spectra-trait models for the prediction of leaf photosynthetic capacity. This includes models focused on the prediction of leaf nitrogen, leaf mass per area (LMA), leaf water content (LWC), Vcmax, Jmax and dark respiration.

  spectraspectra-traitgasexchangejmaxleafphysiologyspectralvcmaxrespirationrdarkplsrplsr-modelplsr-modelingleaf-functional-traits
  Language:R 6

• AHuffmyer / EarlyLifeHistory_Energetics

  Ontogenetic shifts in symbiotic and metabolic state in coral early life history

  coraldevelopmentlarvaemetabolismmetabolomicsphysiologyrecruitrespirometrysymbiosistranscriptomics
  Language:HTML 5

• EOA-team / sentinel2_crop_trait_timeseries

  Sentinel-2 Crop Trait Timeseries Reconstruction using Physiological Dose-Response Curves

  crop-productivityleaf-area-indexphysiologyremote-sensingsentinel-2timeseries
  Language:Python 5

• FedericoTartarini / jsthermalcomfort

  JavaScript package to calculate several thermal comfort indices (e.g., PMV, SET, two-node model, PHS)

  thermal-comfortphysiologythermal-comfort-indexthermal-stress
  Language:JavaScript 4

• smoia / phys2cvr

  python module to compute cerebrovascular reactivity mapping and other related maps

  pythoncvrphysiologylagged-glmneuroimagingfmrihacktoberfest
  Language:Python 4

• cremerlab / flux_parity

  Complete history of the manuscript "An Optimal Regulation of Fluxes Dictates Microbial Growth In and Out of Steady-State"

  microbiologyphysiologysystems-biology
  Language:HTML 3

• dpmagill / iphys-toolbox

  FacePulseRate: A suite of features to facilitate the use of pulse-rate algorithms included in iPhys Toolbox.

  non-contact-pulse-rateheart-rateface-detectionopencvskin-segmentationppgskin-detectionrppgvideoblood-volume-pulsebvppulse-ratenon-contactpsychophysiologypsychologyphysiologyautonomic-nervous-system
  Language:C 3

• Layton-Lab / nephron

  Computational models for epithelial transport along the nephron.

  kidneycomputational-biologynephronphysiologymathematical-biology
  Language:Python 3

• ontox-hu / ontox-phymdos

  Phymdos - the ONTOX Physiological maps documentation software

  ontoxphysiological-dataphysiology
  Language:R 3

• RealityBending / SussexPhysioProtocol

  Sussex Psychophysiology Research Protocol (SuPREP)

  cardiacecgedaelectrodermal-activityethicalethicsinformed-consentinvasiveirbneuroimagingneurosciencephysiologypsychophysiologyskin-conductanceuniversity-of-sussexsussex
  3

• ScottHarris17 / Bassoon

  A python wrapper for developing, organizing, and deploying vision science experiments.

  visionretinaneurosceincepsychologystimuliphysiologypsychopy
  Language:Python 3

• CWRUChielLab / axographio

  A Python package for reading and writing AxoGraph data files

  axographpythonelectrophysiologyphysiology
  Language:C++ 2

• embedded-sergey / FishResp-Rpackage

  R package for aquatic respirometry [FishResp project]

  respirometryphysiologyrpackage
  Language:R 2