physiology

There are 5 repositories under physiology topic.

NeuroKit
neuropsychology / NeuroKit
NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
python ecg eda emg eeg ppg signal physiology biosignals scr skin-conductance heart-rate hrv tutorial signal-processing cardiac software eog entropy hacktoberfest
Language:Python 1910
neuropsychology / NeuroKit.py
A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).
biosignals python eeg eda neuroscience microstates hrv rsa heart-rate ecg physiology neurophysiology complexity entropy fractal-dimension neuropsychology psychology emg bvp ppg
Language:Python 379
forrestbao / pyeeg
Python + EEG/MEG = PyEEG
python series meg python-eeg eeg physiology
Language:Python 258
ismorphism / DeepECG
ECG classification programs based on ML/DL methods
ecg-classification mit-bh dataset electrode-voltage-measurements python cinc-challenge ecg deep-learning keras tensorflow cardio convolutional-neural-networks recurrent-neural-networks physiology physiological-signals heart-rate qrs neural-network bioinformatics chemoinformatics
Language:Python 257
danmcduff / iphys-toolbox
A MATLAB toolbox for iPPG analysis. The toolbox includes implementations of commonly used methods.
physiology toolbox video
Language:MATLAB 194
Chaste / Chaste
Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
c-plus-plus cancer-research cell-based computational-biology developmental-biology electrophysiology hpc-applications mathematical-biology mathematical-modelling physiology
Language:C++ 130
swharden / pyABF
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
abf electrophysiology hacktoberfest neuron neuroscience physiology
Language:Jupyter Notebook 110
CellMLToolkit.jl
SciML / CellMLToolkit.jl
CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
cellml systems-biology differential-equations julia ode physiology scientific-machine-learning sciml
Language:Julia 67
pymuscle
iandanforth / pymuscle
A motor unit based model of skeletal muscle and fatigue
agent-based-simulation machine-learning neuroscience physiology
Language:Python 66
phys2bids
physiopy / phys2bids
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
bids physiological-signals physiology python3-library physiological-recordings labchart acqknowledge brainweb hacktoberfest closember ge spike2
Language:Python 65
Gabrock94 / Pysiology
A Python package for physyological's signals processing
python physiology physiological-signals signal-processing ecg ecg-signal emg emg-signal eda gsr electrophysiology electrophysiological-data
Language:Python 63
openhdemg
GiacomoValliPhD / openhdemg
A powerful toolbox for the analysis of HD-EMG recordings
electromyogram electromyography high-density-emg motor-units motor-units-properties muscle muscle-activity physiology
Language:Python 37
physiopy / peakdet
Toolbox for physiological peak detection analyses. Soon to be deprecated in favour of prep4phys
hacktoberfest peak-detection physiological-signals physiology
Language:Python 27
ngebodh / GX_tES_EEG_Physio_Behavior
Supporting code for the GX Dataset
eeg ecg neuroscience physiology spectrogram dataset eeg-signals eeg-analysis eeg-data ecg-signal neuromodulation physiological-data physiological-signals behavior behavioral-analytics heart-rate tdcs tacs
Language:HTML 24
EOA-team / sentinel2_crop_traits
Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)
chlorophyll leaf-area-index phenology phenotyping physiology remote-sensing sentinel-2
Language:Python 23
revanurambareesh / instantaneous_transformer
Official repo of Instantaneous Transformers for Video based Physiology estimation (Accepted to AAAI workshop and Springer Studies in Computational Intelligence)
deep-learning computer-vision machine-learning research transformers convolutional-neural-networks human-computer-interaction physiology pytorch instantaneous-transformer
Language:Python 21
SMARTlab-Purdue / ros2-foxy-wearable-biosensors
This repository is a new wearable biosensors package for ROS2-Foxy. The ultimate goal of this repo is to expand the biosensors ecosystem in the Human-Robot Interaction (HRI) field. The package currently supports six wearable biosensors that can be used in HRI researches without behavioral constraints caused by limited hardware specifications (e.g., wired devices). We will keep updating this GitHub to support various wearable sensors on ROS 2 system. If you are interested in this project, please contact us.
ros2 ros2-foxy biosensors biosensor physiology wearable-devices affective-computing cognitive-science robotics cognitive-robotics affective-robotics biosignal ros2-foxy-biosensor
Language:Python 19
aaron-schroeder / heartandsole
Python library for analysis of running data files
ant fit fit-sdk fitanalysis garmin govss intensity physiology running strava trainingpeaks
Language:Python 13
bccummings / acq-tools
Toolkit for analyzing physiologic data collected via Biopac AcqKnowledge software.
biomedical-data-science biomedical-engineering biopac data-acquisition health-informatics physiology research-data-management
Language:Python 13
plantphys / gsti
A project focused on the development of generalized spectra-trait models for the prediction of leaf photosynthetic capacity. This includes models focused on the prediction of Vcmax, Jmax and dark respiration as well as leaf nitrogen, leaf mass per area (LMA), leaf water content (LWC).
spectra spectra-trait gasexchange jmax leaf physiology spectral vcmax respiration rdark plsr plsr-model plsr-modeling leaf-functional-traits
Language:Standard ML 13
philschatz / anatomy-book
:orange_book: Anatomy and Physiology Textbook (Openstax)
textbook openstax cc-by anatomy physiology
Language:CSS 11
willxxy / Text-EGM
[CHIL 2024] Interpretation of Intracardiac Electrograms Through Textual Representations
cardiology deep-learning electrophysiology healthcare interpretability language-model machine-learning masked-language-models physiological-signals physiology representation-learning
Language:Python 10
Nikeshbajaj / phyaat
PhyAAt: Physiology of Auditory Attention - Processing Library
auditory-attention physiology physiology-auditory-attention eeg gsr ppg brainwave eeg-signals eeg-analysis cognitive-psychology galvanic-skin-response heart-rate machine-learning deeplearning eeg-dataset
Language:Python 9
EOA-team / sentinel2_crop_trait_timeseries
Sentinel-2 Crop Trait Timeseries Reconstruction using Physiological Dose-Response Curves
crop-productivity leaf-area-index physiology remote-sensing sentinel-2 timeseries
Language:Python 8
johnjdavisiv / gap-app
Grade-adjusted pace (GAP) calculator for runners
exercise metabolism physiology running sports
Language:HTML 8
physiopy / phys2denoise
A toolbox and collection of scripts to prepare physiology data for fMRI denoise
hacktoberfest closember fmri neuroimaging physiological-signals physiology
Language:Python 8
flintproject / Flint
A simulator for biological and physiological models
simulator biology physiology cellml phml sbml ode sde
Language:C++ 6
LucaCerina / physio-cassette
Storage structures for signals, metadata and event annotations
physiology signals storage
Language:Python 6
pipetcpt / DallphinAtoM
Drugs with Allometry and Physiology Inside - Animal to huMan
allometry physiology
6
AHuffmyer / EarlyLifeHistory_Energetics
Ontogenetic shifts in symbiotic and metabolic state in coral early life history
coral development larvae metabolism metabolomics physiology recruit respirometry symbiosis transcriptomics
Language:HTML 5
FedericoTartarini / jsthermalcomfort
JavaScript package to calculate several thermal comfort indices (e.g., PMV, SET, two-node model, PHS)
thermal-comfort physiology thermal-comfort-index thermal-stress
Language:JavaScript 5
RealityBending / SussexPhysioProtocol
Sussex Psychophysiology Research Protocol (SuPREP)
cardiac ecg eda electrodermal-activity ethical ethics informed-consent invasive irb neuroimaging neuroscience physiology psychophysiology skin-conductance university-of-sussex sussex
4
ScottHarris17 / Bassoon
A python wrapper for developing, organizing, and deploying vision science experiments.
vision retina neurosceince psychology stimuli physiology psychopy
Language:Python 4
smoia / phys2cvr
python module to compute cerebrovascular reactivity mapping and other related maps
python cvr physiology lagged-glm neuroimaging fmri hacktoberfest
Language:Python 4
alimoges42 / chronio
Collection of tools for analysis of physiological time series data
behavior imaging photometry physiology life-sciences calcium-imaging time-series
Language:Python 3
iwissemben / Sleep_deprivation_and_Heart_Rate_Variability-HRV
Study project to test the effect of sleep deprivation on HRV using the Polar ECG belt
activity electrophysiological-data health hrv physiology sleep-research r kubios polar-h10
Language:R 3