FlyBase's repositories
drosophila-anatomy-developmental-ontology
The home of the Drosophila anatomy ontology
flybase-controlled-vocabulary
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
react-sequence-viewer
A React wrapper around the BioJS sequence-viewer component
react-ontology-ribbon
A React component for generating a heatmap type display for GO slims.
drosophila-developmental-ontology
The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.
drosophila-phenotype-ontology
The home of the Drosophila phenotype ontology
biocurator-assistant
A Python-based script for processing scientific article data via GPT-4.
bulkfile-scripts
Scripts useful for working with bulk FlyBase data locally.
harvdev-proforma-testdb
Repository for creation and loading of the proforma test database.
harvdev-utils
Common Python functions used by FlyBase developers at Harvard.
fast-track-your-paper
A tool for expediting curation of published research in genetic databases.
harvdev-proforma-parser
New Python-based proforma parser and loader.
harvdev-bulk-reports
Generate bulk reports for FlyBase curators, users and collaborators.
harvdev-docker
Docker base image for Harvdev applications.
harvdev-peeves-parser
Stripped down peeves for testing ONLY. May be destroyed later. To run on tests to get idea of peeves messages.
harvdev-perl-proforma-parser
Perl proforma parsing code
alliance-file-browser
A repository with a self-contained MongoDB and Mongo Express database viewer for viewing files submitted to the Alliance.
alliance-linkml-flybase
Code for export of FlyBase data to the Alliance LinkML-based persistent store.
blast-db-configuration
Code for generating the Alliance BLAST DB configuration file
component-library
WIP: Test for centralized FB components
flybase-ontology-scripts
Scripts for working with FlyBase ontologies, currently mostly for report generation.
flybase-robot-plugin
A ROBOT plugin for the ontology pipelines at FlyBase
flybase.github.io
FlyBase - github.io http://flybase.github.io
fuzzy-onions
Helper scripts for the FlyBase scRNAseq project
graphql-server
FlyBase GraphQL server (alpha)
react-flybase-utils
A collection of simple React components and JS utilitiy functions for FlyBase.