SainsburyWellcomeCentre's repositories
NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex models
crabs-exploration
A toolkit for detecting and tracking crabs in the field.
aeon_acquisition
Task control and acquisition systems for Project Aeon.
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
aeon_experiments
Experiment workflows for Project Aeon
FNT_timestamp_alignment
Pipeline for aligning harp and ephys timestamps to a single master clock.
FNT_behavior_analysis
Pipeline for giving an overview of behavioural data from mice in the flexible navigation task.
sequences_behaviour
scripts for running and post-hoc analysis of the 8 poke sequence behavioural task
sequences_histology
histology plots for sequences project
sequences_neuropixel_preprocess
pre-processing scripts for neuropixels data for the sequence project
aeon_api
Project Aeon low-level library for interfacing with acquired data. Contains modules for raw data file io, data querying, and data processing.
aeon_scratchpad
Data Analysis code for Project Aeon
rc2_visual_stimuli
Visual stimuli for translocator setup
aeon_schema
A library that defines Project Aeon reusable JSON data schemas
aeon_sleap_processing
Project Aeon computational data pipeline for post-process refinement of SLEAP data using zoomed in cameras.
neuroPico
MicroPython Library for NeuroPico
rc2_analysis_videos
Matlab scripts to analyse behavioural data using the cameras as data source.
rc2_figures
First version of figures for the roller coaster project
sequences_run_PPseq
Preparing data for and running PPseq for the sequences project
sleep-stage-transition
Code to replicate results for sleep stages transitions in small network. Reference: Cellular and neurochemical basis of sleep stages in the thalamocortical network eLife 5:e18607. https://doi.org/10.7554/eLife.18607