2-photon

There are 0 repository under 2-photon topic.

• flatironinstitute / CaImAn

  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

  calcium-imagingdeconvolutionsource-extractionmotion-correctioncnmf2-photon
  Language:Python 605

• phflot / flow_registration

  Flow-Registration toolbox for 2P motion compensation

  2-photoncalcium-imagingimagej-pluginsmatlabmotion-compensationmotion-correctionneuroimaging
  Language:MATLAB 20

• SWC-Advanced-Microscopy / BakingTray

  Serial-section automated anatomy extension for ScanImage

  microscopyimagingtomography2-photonserial-sectionmatlabscanimageanatomyneuroanatomyneuroscience
  Language:MATLAB 10

• SWC-Advanced-Microscopy / SimpleMScanner

  Simple MATLAB scanning software for demo purposes

  scanninglaserdata-acquisitionneuroimagingmicroscopymatlab2-photonni-daqmxexamples
  Language:MATLAB 5

• SWC-Advanced-Microscopy / SimplePyScanner

  Simple Python scanning software for demo purposes

  scanninglaserdata-acquisitionneuroimagingmicroscopypython2-photonni-daqmxexamples
  Language:Python 5

• BaselLaserMouse / LaserControl

  MATLAB control classes for lasers

  matlablaserhardwareaommicroscopy2-photon
  Language:MATLAB 4
• pvbs

  flosfor / pvbs

  PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging

  neuroscienceelectrophysiologypatch-clampneurophysiologycalcium-imagingpatchclamp2-photon2p-imagingprairie-viewglutamate-uncaging2p-glutamate-uncaging2p-uncaging
  Language:MATLAB 3

• hjmh / fly2p

  utility functions for analyzing (fly) calcium imaging data

  2-photoncalcium-imagingmicromanagerpythonscanimage
  Language:Jupyter Notebook 3

• ankushgpta2 / 2PhotonProcessor

  Code for Important Processing Steps For .Tiff or .Raw Video Files Acquired From 2-Photon Imaging System + Completely Automated and With NWB Schema (.HDF5) Capability

  2-photoncriticalitymetadatamicroscopyneuronsneurosciencephysicsstatistical-mechanicsvideosrenormalization-groupscalingtimeseries
  Language:MATLAB 1

• CommanderPho / phoCrossDayAlignment

  2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.

  calcium-imagingcalcium-imaging-analyzer2-photonmatlabmatlab-guineuroscience
  Language:MATLAB 1

• jefferis / scanimage

  read and analyse 2 photon images from ScanImage

  rscanimageimagejimage-processing2-photon
  Language:R 1

• NeLy-EPFL / utils2p

  Utility functions for data generated with ThorImage and ThorSync.

  2-photonthor-imagethor-syncstable-infrastructure
  Language:Python 1

• tenss / image-analysis

  Examples illustrating basic stages of analyzing calcium imaging data

  2-photonimagingneuroscience
  Language:MATLAB 1

• lauraluebbert / ThorImage-Sync_2P-analysis

  Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.

  calcium-imagingthorimagethorsync2-photonimage-processing
  Language:Jupyter Notebook 0

• MamiyaA / NeuralCodingOfLegProprioception_CalciumImagingAnalyses

  Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)

  calcium-imaging2-photondrosophilak-means-clusteringcorrelation-matricesimage-processingregion-of-interestregion-detectionimage-registrationfast-fourier-transformgaussian-filter
  Language:MATLAB 0

• shih-liang / CaImAn-pkgbuild

  PKGBUILD of CaImAn for Archlinux

  2-photoncaimancalcium-imagingcnmfdeconvolutionmotion-correctionsource-extraction
  Language:Shell