zebrafish
There are 0 repository under zebrafish topic.
brainglobe / slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
Language:Python 37ElisabethKugler / ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
Language:ImageJ Macro 10obophenotype / zebrafish-phenotype-ontology
A vocabulary for describing Zebrafish Phenotypes
Language:Python 9jordan-g / Zebrafish-Tracking
Software for performing offline tracking of zebrafish larvae.
Language:Python 6- GliaMorph
#GliaMorph - Toolkit to Process and Analyse MĂĽller Glia Morphology
Language:ImageJ Macro 5 haesemeyer / GradientPrediction
Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"
Language:Python 5BadenLab / Zebrafish-visual-space-model
Modelling the larval zebrafish field of view for illustration purposes
Language:OpenSCAD 3colbyford / zebrafish_mecp2_expression
Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish
Language:HTML 3DavidStirling / QuantiFish
Zebrafish embryo fluorescence quantification
Language:Python 3suzaku-x / Zebrafish-Brain-Visualization
A simple tool for zebrafish brain visualization.
Language:Python 3:fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
Language:Java 2carlescn / scRNAseq-tools
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
Language:Shell 1eteixido / Knime-workflows-FishInspector
This is a collection of Knime workflows developed for the analysis of the data obtained with the FishInspector software
- Language:Python 1
kostasl / zebrafish_tracker
Behaviour analysis tracking and data analysis software using machine vision to track larval zebrafish behaviour. Software is built using C++,QT and OpenCV, while R scripts are used for data analysis and figure generation.
Language:C++ 1minkechoi / tx_star-bPAC_brain
Early life GC exposed time-series mRNA-seq analysis and DNA methylome
Language:Jupyter Notebook 1nvladimus / ZebrafishFunctionalMaps_LinearRegression
Computing functional maps in zebrafish brain
Language:Jupyter Notebook 1Scott-Lab-QBI / Brainwide_auditory_processing
Set of functions, scripts and notebooks used in the brain-wide auditory processing project
Language:Jupyter Notebook 1sscholz-UFZ / EmbryoMotion
Software for analyis of zebrafish embryo sponaneous tail contractions and photomotor response
- Language:Jupyter Notebook 1
cenk-celik / kaliya_perumal_d_rerio
RNA-seq analysis for zebrafish with muscle injury
Language:R 0dgavr / Zebrafish_mappability
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
Language:Python 0- emphazis
emphazis-org / emphazis
Zebrafish tracking made simple.
Language:R 0 Godino-Gimeno-A / aversive-learning
Obesity impairs cognitive function with no effects on anxiety-like behaviour in zebrafish
0igarcia17 / zebraFishTranscriptome
Shiny app that recopilates all gene expression of zebra fish and informs about the tissue and developmental stage in which the gene is expressed.
Language:R 0ltedgar-ed / flow_idealised_ISV_network
Network flow model of the zebrafish trunk vasculature (Control and Wasp Mutant data included) as part of the study presented by Rosa et. al. 2022 (https://journals.biologists.com/dev/article/149/3/dev200195/274169)
Language:MATLAB 0rjstevick / loperamide-zebrafish-dysbiosis
Analysis of 16S rRNA and in vitro data from larval zebrafish with loperamide treatment
Language:HTML 0- Language:C++ 0
weygoldt / colorblind-directioncells
A lab rotation with the systems neuroscience lab, University of Tuebingen, where we tested whether color contrast contributed to encoding motion in direction selective cells of the zebrafish optic tectum.
Language:Jupyter Notebook 0Animadversio / Light-Sheet-Data-Processing-Script
Collection of scripts for running data processing of light sheet data
Language:Juliablachlylab / SABER
SABER: Selection of Amplicon Barcodes from Experimental Replicates
Language:Rdrguggiana / Guggiana_2021
Repository for the article "Distributed chromatic processing at the interface between retina and brain in the larval zebrafish", Guggiana et al. 2021, Curr. Bio.
Language:MATLABLauLauThom / interactive-embedding-kidney
This repo contains the files to generate an interactive view of a feature set in the tensorflow embedding projector interface.
Analysis of 16S rRNA and microscopy data from larval zebrafish
Language:HTMLsielerjm / ZF-Diet_Infection
Code used for analysis in the publication: Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae infection. Don't hesitate to reach out with any questions.
Language:HTMLYogiOnBioinformatics / ChIP-Seq-Analysis-Nanog-and-H3K27Ac
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
