drosophila

There are 1 repository under drosophila topic.

• neurokernel / neurokernel

  Neurokernel Project

  drosophilagpuneuralbrainsimulation
  Language:Python 558

• TuragaLab / flybody

  MuJoCo fruit fly body model and locomotion RL tasks

  deep-learningdrosophilamujocoreinforcement-learning
  Language:Python 457

• FlyBase / drosophila-anatomy-developmental-ontology

  The home of the Drosophila anatomy ontology

  anatomydrosophilaflybaseobofoundryontology
  Language:Jupyter Notebook 19

• adamspierer / FreeClimber

  FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

  local-linear-regressionfliesparticle-detectiondrosophiladrosophila-behaviourclimbinglocomotionscientific-softwarescientific-researchanimal-behavioranimal-movementpython3background-subtractionrapid-iterative-negative-geotaxis
  Language:Python 16

• navis-org / navis-flybrains

  Transforms for navis that enable mapping between different Drosophila template brains.

  navistransformstemplatesdrosophilabrainbridgingmirroringregistrationsvnc
  Language:Jupyter Notebook 13

• FlyBase / flybase-controlled-vocabulary

  The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)

  drosophilaflybaseobofoundryontologyphenotypegenetics
  Language:Shell 10

• neuralsignal / dreye

  Dreye: Receptor Space Manipulation

  color-visioninsect-eyedrosophilacolorcolor-theoryneurosciencestimulus-designstimulus-presentationpython
  Language:Jupyter Notebook 6

• schlegelp / pyfim

  Python package for analysis of FIMTrack data

  fimfimtracktrackingdrosophilalarvapython
  Language:Python 6

• FlyBase / drosophila-developmental-ontology

  The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.

  developmentdrosophilaflybaseobofoundryontology
  Language:Makefile 5

• henryjuho / drosophila_indels

  Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.

  population-geneticsbioinformaticsindelsinsertiondeletiondrosophila
  Language:Python 5

• JaneliaSciComp / neuronbridge

  EM/LM neuron search

  awsdrosophilajanelianeuroimagingneuronsneuroscience
  Language:JavaScript 4

• natverse / flycircuit

  R package flycircuit

  rneuroanatomy-toolboxneuroanatomydrosophilanatverse
  Language:R 4

• gogoalexy / FlyintelBot

  Bio-inspired spiking-neural-network framework on an autonomous robot car.

  snnspiking-neural-networknavigationdrosophilarobot-framework
  Language:C++ 3

• kmcluskey / FlyMet

  A multi-omics web app for Drosophila tissues

  metabolomicsdrosophila
  Language:Python 3

• michaelrauscher / flyalyzer

  Flyalyzer fruit fly kinematics tracker for matlab

  drosophiladrosophila-behaviourbiologyneuroscienceneuroscience-methodsanimal-behavioranimal-trackingbiomechanicsmatlabmatlab-gui
  Language:MATLAB 3

• sg-s / spikesort

  [no longer supported] for a more powerful version of this that supports multiple channels and uses machine learning, look here ➡️

  dimensionality-reductionspike-shapesmatlabspike-sortingtsne-algorithmclusteringneuroscienceephyselectrophysiologytsnedrosophila
  Language:MATLAB 3

• sjackman / abyss-drosophila-melanogaster

  :microscope: Assemble Drosophila melanogaster with ABySS

  abyssgenomeassemblydrosophila
  Language:HTML 3

• flyconnectome / fancr

  Support Acccess to the Female Adult Nerve Cord (FANC) Dataset

  rnatverseneuroanatomydrosophiladrosophila-brainsneuroscience
  Language:R 2

• jefferis / vfbr

  R Package to Access the Virtual Fly Brain project API

  drosophilaneuronanatomyrvirtualflybrain
  Language:R 2

• jfear / larval_gonad

  Preliminary study to figure out how many larval gonads are needed for RNA-Seq

  scrna-seqdrosophila10x-genomics
  Language:Jupyter Notebook 2

• jkemppainen / CG-compound-eye

  DPP producing 3D model

  computer-graphicsblenderluxcorerenderparametric-modellingdrosophilacompound-eyestereo-visionneurosciencedeep-pseudopupilrhabdomereommatidium
  Language:Python 2

• musaprog / gonio-analysis

  Goniometric motion analysis software

  motion-analysisdrosophiladeep-pseudopupilspatial-analysis
  Language:Python 2

• natverse / nat.flybrains

  Support for Drosophila bridging/mirroring registrations in R

  rtemplate-brainsneuroanatomy-toolboxneuroanatomydrosophilabridging-registrationsnatverse
  Language:Haxe 2

• reiserlab / male-drosophila-visual-system-connectome-code

  Supplemental source code for Nern et al. 2024: "Connectome-driven neural inventory of a complete visual system". The Cell type explorer repository is at https://github.com/reiserlab/male-drosophila-visual-system-connectome

  connectomedrosophilavisual-system
  Language:Python 2

• amirmasoudabdol / flyOpt

  The Drosophila melanogaster gap genes circuit simulator, coupled with Scatter Search optimization algorithm

  biological-simulationsgene-regulationnumerical-optimizationoptimization-algorithmsdrosophila
  Language:C 1

• bruvellu / cephalic-furrow

  Cephalic furrow project repository

  dipteradrosophilaevo-devoevolutionmechanobiologymorphogenesis
  Language:Jupyter Notebook 1

• ClandininLab / pasna-acr-currbio2021

  Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.

  drosophiladrosophila-brainsdrosophila-larvaedrosophila-melanogaster
  Language:Python 1

• dennishazelett / recombulator

  Calculate recombination frequencies and plan for crosses in Drosophila Genetics

  geneticsdrosophilarecombination
  Language:Python 1

• intermine / flymine-bio-sources

  Data sources for FlyMine

  bioinformaticsbiologydrosophilapostgresqljavagenegenetics
  Language:Java 1

• Nicholas-Sliter / larva-sim

  drosophiladrosophila-larvaedrosophila-behaviouroopagent-based-modelingagent-based-simulationcomplexitysynchronizationmiddlebury
  Language:Python 1

• sg-s / phd-thesis

  "Gain control in Drosophila Olfactory Neurons" -- a PhD thesis submitted to Yale University

  gain-controldrosophilaolfactionneurosciencephd-thesisthesis
  Language:TeX 1

• straightlab / flypipe

  Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts

  char-seqdrosophila
  Language:Shell 1

• ttdtrang / data-rnaseq-Dmel

  Data package for Drosophila melanogaster RNA-seq

  datadata-packagedrosophiladrosophila-melanogasterercc-rna-spike-inrrna-seq
  Language:R 1

• Pablo1990 / 3D-deep-segmentation-protocol

  Single cell resolution 3D imaging and segmentation within intact live tissues

  3dcell-biologycellposedeep-learningdrosophilasegmentation
  Language:Jupyter Notebook 0

• eric-jurado / tethered-fly

  Simulation of a magnetically tethered fly's yaw kinematics.

  drosophila
  Language:MATLAB

• WangET2 / EyeSpy

  EyeSpy is a lightweight application which aims to calculate the mean fluorescence of a fly's eye over an automatically determined region of interest.

  drosophilafluorescencefluorescence-microscopy-imagingimage-processingmicroscopy
  Language:Python