drosophila
There are 1 repository under drosophila topic.
- Language:Python 544
- Language:Python 75
FlyBase / drosophila-anatomy-developmental-ontology
The home of the Drosophila anatomy ontology
Language:Jupyter Notebook 18adamspierer / FreeClimber
FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay
Language:Python 14The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
Language:Shell 9- Language:Jupyter Notebook 5
navis-org / navis-flybrains
Transforms for navis that enable mapping between different Drosophila template brains.
Language:Jupyter Notebook 5The home of the Drosophila developmental ontology, an ontology of Drosophila melanogaster developmental stages.
Language:Makefile 4henryjuho / drosophila_indels
Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
Language:Python 4- Language:JavaScript 4
- Language:R 4
- Language:Python 4
gogoalexy / FlyintelBot
Bio-inspired spiking-neural-network framework on an autonomous robot car.
Language:C++ 3- Language:Python 3
michaelrauscher / flyalyzer
Flyalyzer fruit fly kinematics tracker for matlab
Language:MATLAB 3sg-s / spikesort
[no longer supported] for a more powerful version of this that supports multiple channels and uses machine learning, look here ➡️
Language:MATLAB 3sjackman / abyss-drosophila-melanogaster
:microscope: Assemble Drosophila melanogaster with ABySS
Language:HTML 3- Language:R 2
jfear / larval_gonad
Preliminary study to figure out how many larval gonads are needed for RNA-Seq
Language:Jupyter Notebook 2jkemppainen / CG-compound-eye
DPP producing 3D model
Language:Python 2natverse / nat.flybrains
Support for Drosophila bridging/mirroring registrations in R
Language:Haxe 2amirmasoudabdol / flyOpt
The Drosophila melanogaster gap genes circuit simulator, coupled with Scatter Search optimization algorithm
Language:C 1ClandininLab / pasna-acr-currbio2021
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
Language:Python 1dennishazelett / recombulator
Calculate recombination frequencies and plan for crosses in Drosophila Genetics
Language:Python 1flyconnectome / fancr
Support Acccess to the Female Adult Nerve Cord (FANC) Dataset
Language:R 1intermine / flymine-bio-sources
Data sources for FlyMine
Language:Java 1musaprog / gonio-analysis
Goniometric motion analysis software
Language:Python 1- Language:Python 1
reiserlab / male-drosophila-visual-system-connectome
Supplemental "Cell Type Explorer" for Nern et al. 2024: "Connectome-driven neural inventory of a complete visual system"
Language:HTML 1Supplemental source code for Nern et al. 2024: "Connectome-driven neural inventory of a complete visual system"
Language:Jupyter Notebook 1"Gain control in Drosophila Olfactory Neurons" -- a PhD thesis submitted to Yale University
Language:TeX 1straightlab / flypipe
Pipeline to process single end ChARseq reads to a combined, filtered and annotated matrix of RNA to DNA contacts
Language:Shell 1ttdtrang / data-rnaseq-Dmel
Data package for Drosophila melanogaster RNA-seq
Language:R 1- Language:MATLAB 0
- Language:MATLAB 0
neurorishika / FlyOptoStimAnalysis
Python-based Analysis of Fruit fly decision-making data for associative learning under different reward stimulations (Turner Lab, HHMI, 2023)
Language:Jupyter Notebook
