monarchinitiative
There are 10 repositories under monarchinitiative topic.
monarch-initiative / ontogpt
LLM-based ontological extraction tools, including SPIRES
Language:Jupyter Notebook 519- human-phenotype-ontology
obophenotype / human-phenotype-ontology
Ontology for the description of human clinical features
Language:Makefile 279 - mondo
Mondo Disease Ontology
Language:Jupyter Notebook 218 - ExomiserLanguage:Java 183
- biolink-model
biolink / biolink-model
Schema and generated objects for biolink data model and upper ontology
Language:Python 167 - cell-ontology
An ontology of cell types
Language:Makefile 132 - uberon
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Language:Emacs Lisp 129 INCATools / ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
Language:Jupyter Notebook 104Knowledge-Graph-Hub / kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
Language:Python 78- phenopacket-schema
phenopackets / phenopacket-schema
Repository for the GA4GH phenopacket schema
Language:Java 69 - Language:Python 56
Medical action ontology
Language:HTML 47Ontology for representing scientific evidence and provenance information
Language:Makefile 45Data transformation framework for LinkML data models
Language:Python 43LLM-driven curation assist tool (pre-alpha)
Language:Jupyter Notebook 42- Language:JavaScript 42
- environmental-exposure-ontology
EnvironmentOntology / environmental-exposure-ontology
Modular environmental exposures ontology
Language:Makefile 32 Java library to map LOINC-encoded test results to Human Phenotype Ontology
Language:Java 29A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
Language:Python 28- Language:Scala 26
source files for OBA (Ontology of Biological Attributes)
Language:Jupyter Notebook 26- Language:Python 26
TheJacksonLaboratory / loinc2hpoAnnotation
loinc2hpo Annotation Data
Language:Python 24Utility for working with DOSDP design patterns and OWL ontologies
Language:Scala 23phenol: Phenotype ontology library
Language:Java 22- Language:Java 21
Repository for representing genotypes and their association with phenotypes
Language:Makefile 18THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
Language:Prolog 17The previous version of the Monarch Initiative website
Language:Vue 17- Language:Python 16
Ontology Based Profile Matching
Language:JavaScript 16- Language:Vue 14
Data ingest application for Monarch Initiative knowledge graph using Koza
Language:Python 14The phenogrid widget
Language:JavaScript 13A framework for empirical evaluation of phenotype matching and prioritisation
Language:Python 10National-COVID-Cohort-Collaborative / semanticsimilarity
A python library for calculating semantic similarity between patients in N3C
Language:Python 10
