quantification

There are 2 repositories under quantification topic.

ciso-assistant-community
intuitem / ciso-assistant-community
CISO Assistant is a one-stop-shop for GRC, covering Risk, AppSec, Compliance/Audit Management, Privacy and supporting +100 frameworks worldwide with auto-mapping: NIST CSF, ISO 27001, SOC2, CIS, PCI DSS, NIS2, CMMC, PSPF, GDPR, HIPAA, Essential Eight, NYDFS-500, DORA, NIST AI RMF, 800-53, CyFun, AirCyber, NCSC, ECC, SCF and so much more
compliance grc soc2 gdpr audit iso27001 cis dora risk-management owasp nist privacy bsi cybersecurity isms ebios-rm nis2 security mcp quantification
Language:Python 3343
COMBINE-lab / salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
quasi-mapping bioinformatics rna-seq rnaseq salmon quantification sailfish c-plus-plus gene-expression scrna-seq single-cell 10x selective-alignment rna-seq-quantification single-cell-rna-seq transcriptome
Language:C++ 844
pinellolab / CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
genome-editing quantification amplicon-sequences
Language:Python 321
diplib
DIPlib / diplib
Quantitative Image Analysis in C++, MATLAB and Python
quantitative-image-analysis image-analysis image-processing mathematical-morphology filtering quantification image-viewer cpp cpp14 matlab python python3 bio-formats dipimage diplib
Language:C++ 245
COMBINE-lab / alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
10x quantification rna-seq rust single-cell single-cell-rna-seq transcriptomics
Language:Rust 194
theislab / kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
data-science batch-effects scrnaseq quantification
Language:HTML 168
rajewsky-lab / mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
mirna microrna smallrna sequencing analysis prediction quantification mapping
Language:Perl 154
PaulingLiu / ROGUE
Assessing the purity of single cell population
quantification scrna-seq purity clustering
Language:R 136
songjian / cnstats
获取**国家统计局网站数据。
python quantification stats
Language:Python 105
Aegis1863 / LLMs-Distillation-Quantification
Repo of ACL 2025 Paper "Quantification of Large Language Model Distillation"
distillation llms quantification
Language:Python 92
HLT-ISTI / QuaPy
A framework for Quantification written in Python
machine-learning quantification supervised-prevalence-estimation
Language:Python 67
microsoft / PullRequestQuantifier
A highly customizable framework to quantify a pull request within a repository context.
pull requests quantification size
Language:C# 61
MannLabs / directlfq
Fast and accurate label-free quantification for small and very large numbers of proteomes
algorithms bioinformatics proteomics quantification alphapept-ecosystem python
Language:Jupyter Notebook 60
iquasere / reCOGnizer
A tool for domain based annotation with databases from the Conserved Domains Database
annotation cog-assignment fasta functional-annotation genomics protein quantification
Language:HTML 30
xu-peng-tao / SSD-Pruning-and-quantization
Pruning and quantization for SSD. Model compression.
compression prune pruning pytorch quantification quantization ssd
Language:Python 30
DATASET_PLATEUN01
shm-unesp / DATASET_PLATEUN01
CONCEPT is a dataset of lamb-wave measured in composite structures in healthy and damaged states. This experiment was conducted at the SHM Lab from UNESP Ilha Solteira.
pzt structures damage detection quantification smart-structures lamb-wave structural-health-monitoring delamination
Language:Jupyter Notebook 28
elliotekj / DeltaE
DeltaE is a pure-Rust implementation of the CIEDE2000 algorithm
color quantification cie ciede2000 rust
Language:Rust 25
nf-core / dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
rna-seq dualrna-seq host-pathogen readmapping quantification nextflow pipeline workflow nf-core
Language:Nextflow 24
PavlidisLab / rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
rna-seq alignment quantification ngs ngs-analysis illumina rsem star stringtie fastqc bioinformatics-pipeline bioinformatics gene-expression transcriptomics genomics spliced-alignment splice-aware bash
Language:Shell 24
nf-core / metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
workflow metabolomics identification quantification mass-spectrometry nextflow pipeline nf-core ms1 ms2
Language:Nextflow 23
smith-chem-wisc / FlashLFQ
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
mass-spectrometry proteomics chemistry quantification
Language:C# 22
lweasel / piquant
A pipeline to assess the quantification of transcripts.
bioinformatics rna-sequencing transcripts quantification
Language:Python 19
MannLabs / alphaquant
An open-source Python package for accurate and sensitive peptide and protein quantification.
proteomics quantification dia lfq tmt bioinformatics mass-spectrometry
Language:Python 18
bigbio / ibaqpy
Absolute quantification package based on quantms.io
absolute-quantification ibaq mass-spectrometry proteomics quantification
Language:HTML 16
bkrem / quanti-team
:link: A TenderMint blockchain API to make collaborative work measurable & quantifiable
blockchain collaboration paper proof-of-concept quantification tendermint
Language:JavaScript 16
comprna / ORQAS
ORF Quantification pipeline for Alternative Splicing
ribo-seq translation quantification differential-splicing-analysis
Language:Python 16
smith-chem-wisc / ProteoformSuite
Construction, quantification, and visualization of proteoform families
visualization quantification proteome cytoscape proteoform proteoform-families ptm
Language:C# 14
AICGijon / quantificationlib
QuantificationLib is an open-source library for quantification learning.
machine-learning prevalence-estimation python quantification
Language:Python 11
cpanse / protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
proteomics mass-spectrometry visualization quantification fun cran peptide-identification rstats
Language:R 11
ElisabethKugler / ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
segmentation image-processing zebrafish vasculature registration quantification fiji-macro-language fiji openscience lightsheet microscopy microscopy-data
Language:ImageJ Macro 11
mchevalier2 / crestr
A R package to apply the climate reconstruction CREST.
climate taxa crest reconstruction palaeoclimate quantification
Language:R 11
erdogant / KNRscore
KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.
embeddings tsne umap pca quantification high-dimensional dimensionality-reduction python
Language:Python 9
KomeijiForce / Active_Passive_Constraint_Koishiday_2024
Koishi's Day 2024 Paper (NeurIPS 2024): An advanced persona-driven role-playing system with global faithfulness quantification and optimization. In memory of the Koishi's Day of 2024.
ai-character factuality-checking faithfulness global-optimization metrics quantification role-playing komeiji
Language:Python 9
rohitsuratekar / CardioPipeLine
Pipeline for RNA-seq analysis
rna-seq ngs deseq2-analysis quantification pipeline ncbi sra
Language:Python 8
Cai-Lab-at-University-of-Michigan / nGauge
A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.
measurement neuron-morphology python-library quantification visualization
Language:Jupyter Notebook 7
HawkMRS / pyAMARES
pyAMARES, an Open-Source Python Library for Fitting Magnetic Resonance Spectroscopy Data
fitting mrs nmr spectroscopy amares pyamares fid quantification 31p x-nuclei
Language:Python 7

quantification

intuitem / ciso-assistant-community

COMBINE-lab / salmon

pinellolab / CRISPResso2

DIPlib / diplib

COMBINE-lab / alevin-fry

theislab / kBET

rajewsky-lab / mirdeep2

PaulingLiu / ROGUE

songjian / cnstats

Aegis1863 / LLMs-Distillation-Quantification

HLT-ISTI / QuaPy

microsoft / PullRequestQuantifier

MannLabs / directlfq

iquasere / reCOGnizer

xu-peng-tao / SSD-Pruning-and-quantization

shm-unesp / DATASET_PLATEUN01

elliotekj / DeltaE

nf-core / dualrnaseq

PavlidisLab / rnaseq-pipeline

nf-core / metaboigniter

smith-chem-wisc / FlashLFQ

lweasel / piquant

MannLabs / alphaquant

bigbio / ibaqpy

bkrem / quanti-team

comprna / ORQAS

smith-chem-wisc / ProteoformSuite

AICGijon / quantificationlib

cpanse / protViz

ElisabethKugler / ZFVascularQuantification

mchevalier2 / crestr

erdogant / KNRscore

KomeijiForce / Active_Passive_Constraint_Koishiday_2024

rohitsuratekar / CardioPipeLine

Cai-Lab-at-University-of-Michigan / nGauge

HawkMRS / pyAMARES