phenomics

There are 0 repository under phenomics topic.

• GeneDx / phenopy

  Phenotype comparison tools using semantic similarity.

  hposemantic-similarityphenotypesphenomics
  Language:Python 55

• recursionpharma / maes_microscopy

  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.

  computer-visiondeep-learningmasked-autoencodermicroscopybiologygenerative-aiphenomics
  Language:Python 26

• monarch-initiative / phenol

  phenol: Phenotype ontology library

  monarchinitiativephenotypesontologieshuman-phenotype-ontologygenomicsphenomicsjavamammalian-phenotype-ontology
  Language:Java 22

• drseb / HPO-translations

  Internationalisation of the HPO content

  translationlanguageontologysemantic-webhpohpo-translationsphenomicsphenotypesphenotypingphenotype-ontologiesobofoundry
  20
• plantit

  Computational-Plant-Science / plantit

  hpcscience-gatewaysphenotypingphenomicssingularity
  Language:Vue 11

• phenopype / phenopype

  A phenotyping pipeline for Python

  computer-visionimage-analysisimage-processingphenotypingbiology-imagesecologyevolutionphenomics
  Language:Python 10

• terraref / reference-data

  Coordination of Data Products and Standards for TERRA reference data

  phenomicsagriculturesensor-data
  Language:R 9

• drseb / HPO-archive

  HPO archive of the ontology and annotations

  hpoannotationshpo-archiveontologyarchivephenomicsphenotypesphenotypingphenotype-ontologies
  7

• kclhi / phenoflow

  Standardise and share computable disease definitions

  phenomicscommon-workflow-languagephenotypingprojectmonorepo
  Language:JavaScript 7

• Computational-Plant-Science / 3D_model_traits_demo

  Computation of root phenes from 3D point clouds.

  phenotypingphenotyping-algorithmsphenomicsroot
  Language:Python 5

• phytooracle / automation

  Modular, Scalable Phenomic Data Processing Pipelines

  hpcmakeflowphenomicsphenotypingpipelineplantpythonworkqueuedistributed-computinglettuceplant-phenotypingsorghum
  Language:Python 5

• drseb / phenopposites

  Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

  ontologyontologiessemantic-websemanticsphenotypephenotypessimilarity-measuresphenomicsphenotypingphenotype-ontologies
  3

• Phenomics / phenomics.github.io

  Website for the Phenomics and Machine Learning Team

  phenomicphenomicsberlinhpohpo-translationshpo-similaritywebsitephenotypesphenotypingphenotype-ontologies
  Language:HTML 3

• obophenotype / zebrafish-phenotype-ontology-build

  :fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

  ontologyphenotype-ontologieshpozebrafish-phenotypeszebrafishphenotypephenomicsphenotypesphenotyping
  Language:Java 2

• Asad-Ismail / SMN

  Scaleable multitask Network

  multitask-learningimage-processinginstance-segmentationkeypoint-detectionphenotypingvegetablephenomicspytorchdeep-learning
  Language:Python 1

• Computational-Plant-Science / DIRT-storage

  Automatic estimation of storage root length, diameter and volume.

  rootphenotypingphenomics
  Language:Python 1

• CougPhenomics / cougphenomics.github.io

  my snippets and notes for compact plants phenomics center at WSU

  phenomicscomputer-vision
  1

• drseb / hpoweb

  HPO web browser created with Vaadin

  phenomicshpowebsitebrowserphenotypesontologyontologiesphenotypingphenotype-ontologies
  Language:CSS 1

• kiteiru / nsu-diploma-wheat

  This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.

  bioinformaticsneural-networksphenomicscomputer-visionedadetectionlocalizationwheatspikelets
  Language:Jupyter Notebook 1

• zjwinn / Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW

  This is a public repository for relevant code from the publication of the same name.

  genomic-selectiongenomicsphenomics
  1

• derekmichaelwright / AGILE_LDP_GWAS_Phenology

  Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.

  gwaslentilphenologydata-visualizationgeneticsgenomicsmodelingphenomicsdays-to-flowerlatent-variable-phenotypes
  Language:HTML 0

• mukherjeevaskar267 / CRISPRi_Screening_AceticAcid

  Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

  phenomicshigh-throughput-screeningscan-o-maticbioscreenessential-genessaccharomyces-cerevisiaeacetic-acidstress-tolerancecrispriyeast
  Language:R 0

• PelFritz / Barley_HEB25_Project

  Scripts for the HEB25_population

  machine-learningmetabolomicsphenomics
  Language:Python 0
• lidetector

  sauriiiin / lidetector

  LI Detector analytical pipeline for colony-based high-throughput screens.

  phenomicscolony-sizesphenotypinghigh-throughputhigh-throughput-screeningmicrobiologyadaptivebeneficial
  Language:MATLAB 0

• cct-datascience / ardn-genomes-to-fields

  Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)

  dataagriculturebrapiphenomics
  Language:R

• cct-datascience / ardn-terra-ref

  Code used to generate TERRA REF data in BrAPI format for use by the Agricultural Research Data Network (ARDN) and publication at the USDA National Agriculture Library

  brapiterra-refagriculturephenomicsdata
  Language:R

• drseb / hpo-obo-qc

  The QC software for the OBO version of HPO

  hpophenomicsphenotypeontologyquality-controlphenotypesphenotypingphenotype-ontologiesobofoundry
  Language:Java

• drseb / hpo-owl-qc

  The QC software for the OWL version of HPO (only text-checks, not so much logic included)

  hpophenomicsphenotypeontologyquality-controlphenotypesphenotype-ontologiesobofoundry
  Language:Java

• phenoflow / hdr-caliber-phenome-portal

  HDR UK National Phenotype Library

  forkphenomics
  Language:SCSS

• phenoflow / t2dm

  Type 2 Diabetes Mellitus phenotype as a structured phenotype definition, as produced by the Phenoflow architecture.

  phenomics
  Language:Common Workflow Language