danio-rerio

There are 0 repository under danio-rerio topic.

jonathonthill / MMAPPR2
Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
rna-seq forward-genetics mutation-mapping danio-rerio bioconductor bioconductor-package r-package
Language:R 4
carlescn / scRNAseq-tools
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
bioinformatics scrna-seq bash danio-rerio linux zebrafish
Language:Shell 0
dansta0804 / Tbx5_analysis_II
The repository stores files that are used to determine homology between Mus musculus and Danio rerio genomes by analyzing synteny blocks.
chip-seq danio-rerio r regeneration tbx5 circos-plot mus-musculus synteny-block cinteny symap homology
Language:HTML 0
dgavr / Zebrafish_mappability
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
mappability repeats genome genome-browser alignability ngs gem bowtie tsslab zebrafish genome-annotation danio-rerio
Language:Python 0
Data-analysis-of-embryotoxicity-mortality-and-development-delay-in-R
luisloyde / Data-analysis-of-embryotoxicity-mortality-and-development-delay-in-R
This code analyze the mortality (LC50) and General Morphological Score of embryos exposed to sediment and its pore water.
danio-rerio environmental-toxicology embryomortality general-morphological-score
Language:R 0
YogiOnBioinformatics / ChIP-Seq-Analysis-Nanog-and-H3K27Ac
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
computational-genomics bash linux high-performance-computing chip-seq deeptools hisat2 sra histone-modifications developmental-biology zebrafish danio-rerio