Laurent Thomas's repositories
Fiji-RoiClickTools
Fiji Toolbar tool with Roi that perform measurements, are added to Manager and auto next slice
MaskFromRois-Fiji
Fiji plugins for the creation of binary and semantic masks from ROIs in the RoiManager. Works with stacks too.
haar-cascade-nms
OpenCV Haar cascade with non-maxima suppression
Fiji-QualiAnnotations
Fiji plugins for qualitative image annotations + analysis workflows for image-classification and data-visualization
IntensityProfileToolset-ImageJ
Toolset providing an interactive X/Y line profile tools and horizontal/vertical profile
fiji.github.io
Website
HDF5_Vibez
HDF5 plugin for ImageJ and Fiji.
IJ-OpenCV
Library allowing the use of OpenCV in ImageJ by providing converter functions
interactive-embedding-kidney
This repo contains the files to generate an interactive view of a feature set in the tensorflow embedding projector interface.
JythonPackage
Wrapping jython macro script into a jar
knimeTGMM_reloaded
Knime workflow to facilitate segmentation and tracking in 3D + time cell images using the TGMM 1.0 software by the Keller lab (https://www.janelia.org/lab/keller-lab).
NI-USB6008-analog-digital-outputs
This script allows to control analog and digital outputs of a NI-USB-6008 from National Instrument using the PyDAQmx module
ObjectDetectionExamples-ImageJ.JS
Example of ImageJ macros for object-localization
RoiGroupTable
Helper plugin providing a table to facilitate the setting of the names associated to the Roi-group integer indexes in Fiji
scikit-image
Image processing in Python
USB-3101--MeasurementComputing
Simple Python script to control analog and digital outputs for a USB-3101 from Measurement Computing