Colby T. Ford's repositories
pemfauxlizumab
Pembrolizumab-like Antibody Hallucination using AlphaFold2
SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
genomics-in-azure-code
Companion code repository for the "Genomics in the Azure Cloud" book
dolly-on-azure-functions
How to Deploy Databricks Dolly v2 on Azure Functions
DSBA6190-CloudComputing
Course Materials for the DSBA 6190 - Cloud Computing for Data Analysis Course (Spring 2023)
zebrafish_mecp2_expression
Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish
colbyford.github.io
Personal profile website for Colby T. Ford, Ph.D.
scipapers_chatgpt
Companion Repository for: Deploying Azure OpenAI and Building a Custom Science Article Recommender App with ChatGPT
AlphaFold3-Docker
Docker image for AlphaFold3 from Google Deepmind and Isomorphic Labs
bioPowerBI
Power BI resources for reading and visualizing bioinformatics and genomics files
Ghana_CSP_Haplotypes
Genetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy - By Dieng and Ford et al.
gpt-on-genomes
Use Azure OpenAI and Azure Machine Learning Studio to create a GPT model with a genomics context. This example allows for ChatGPT-like chat interactivity with variant information (from modified VCF data).
lecanemab_analysis
Analysis of the anti-amyloid beta mAb: Lecanemab
SARS-CoV-2_BA.2.86_Spike-RBD_Predictions
Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 with In Silico Protein Modeling and Docking
vivax_transcriptome_comparisons
Companion repository for: "Comparative transcriptomics reveal differential gene expression among Plasmodium vivax geographical isolates and implications on erythrocyte invasion mechanisms" by Kepple, et al.
orthanc-on-azure
Deployment logic for running the Orthanc DICOM viewer 🩻 on Azure ☁.
SARS-CoV-2_XBB.1.5_Spike-RBD_Predictions
Predicting changes in neutralizing antibody activity for SARS-CoV-2 XBB.1.5 using in silico protein modeling.
DiffDock-PP
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
luidia_magnifica_in_mexican_pacific
Occurrence of the Indo-West Pacific starfish Luidia magnifica (Echinodermata: Asteroidea) in the Mexican Pacific and a possible introduction to the Caribbean region - Galván-Villa, et al. 2023
reclassification-of-sand-dollars
Phylogeny, ancestral ranges and reclassification of sand dollars
RFdiffusion
Code for running RFdiffusion
ruminate
A Pharmacometrics Data Transformation and Analysis Tool
SeekDeep-Docker
Repository for running SeekDeep in a Docker Container