lightsheet

There are 0 repository under lightsheet topic.

• ome / bioformats

  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  bio-formatsjavaimagelife-sciences-imageformat-readerformat-convertermetadatawhole-slide-imagingwsilightsheet
  Language:Java 365

• QI2lab / OPM

  Control, reconstruction, and analysis code for oblique plane microscopy.

  lightsheetexperimentphysicstimelapseimagingmicromanagergpu-acceleration
  Language:Python 20
• navigate

  TheDeanLab / navigate

  navigate - open source light-sheet microscope controls

  light-sheetmicroscopylight-sheet-microcopylightsheet
  Language:Python 16

• JaneliaSciComp / exllsm-circuit-reconstruction

  Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

  pipelineimage-processingnextflow-pipelineslightsheetmachine-learningmicroscopyneurosciencesegmentation
  Language:Nextflow 12

• BioimageAnalysisCoreWEHI / napari_lattice

  Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

  deskewinglatticelightsheetmicroscopynaparipythonzeissdeconvolutionimage-analysis-and-processingoblique-plane
  Language:Jupyter Notebook 11

• ElisabethKugler / ZFVascularQuantification

  #ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

  fijifiji-macro-languageimage-processinglightsheetmicroscopymicroscopy-dataopensciencequantificationregistrationsegmentationvasculaturezebrafish
  Language:ImageJ Macro 10
• shrimPy

  czbiohub-sf / shrimPy

  shrimPy: Smart High-throughput Robust Imaging & Measurement in Python

  high-throughput-data-analysishigh-throughput-imaginglabelfreelightsheetmulti-modal-imaging
  Language:Python 5

• mesoSPIM / mesoSPIMmat

  MATLAB tools for handling mesoSPIM data

  mesospimimagingmatlablightsheet
  Language:MATLAB 3

• mesoSPIM / mesoSPIM-lazy-loader

  Lazy loader napari plugin for mesoSPIM datasets

  lightsheetnapari-pluginviewer
  Language:Python 2

• neugun / EASEQ-FISH

  A integrated analysis toolbox for 3D spatial transcriptome, enables highly accurate 3D registration for large volume images, and provides barcoding and decoding analysis for spatial transcriptome of thick tissue.

  3ddeep-learninglightsheetpoint-cloudregistrationspatialtranscriptomicsseqfish
  Language:Jupyter Notebook 1

• raacampbell / mesoSPIM-control

  Image acquisition software for mesoSPIM light-sheet microscopes.

  biologyimaginglightsheet
  Language:Jupyter Notebook