There are 4 repositories under fiji topic.
Collection of mathematical morphology methods and plugins for ImageJ
The U-Net Segmentation plugin for Fiji (ImageJ)
sciview is a tool for visualization and interaction with ND image and mesh data
ImageJ functions and macros for working with thermal image files
Fiji plugin for object(s) detection using template(s) matching
ImageJ macros and scripts written at the imaging facility MRI
Z-stack Depth Colorcode ImageJ FIJI plugin
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
Color blind friendly lookup tables for Fiji/ImageJ
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
ImageJ / Fiji macro to automatically correct white balance in RGB images
Non local means filter for ImageJ
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
ImageJ library to detect and analyse connected components (blobs) in binary images
A Fiji plugin for object detection and tracking based on MaskRCNN.
Materials for the "ImageJ/Fiji Level 1: Basics of image processing and analysis" course taught at the Wolfson Bioimaging Facility, University of Bristol.
XitoSBML - the spatial SBML plugin for ImageJ
Adaptive Particle Representation (APR) support in ImageJ/Fiji
ImageJ plugin to read xrm files.
Fiji Toolbar tool with Roi that perform measurements, are added to Manager and auto next slice
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
OMERO.web app to animate multi-dimensional microscopy using 3Dscript, directly from within the OMERO environment.
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
PROJECT MOVED TO https://github.com/hadim/maskflow-fiji
Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.
Homepage of the project
Various tools for ImageJ / Fiji
Expanding the use of color tables in IGOR Pro
ImageJ scripts for stereology and morphometry
Connect Napari with FIJI/ImageJ