Nikita Vladimirov's repositories
ITK_sandbox
Registration and deconvolution of 3/4D microscopy images using simpleITK
lens-testing
Code for optical lens testing
MiraoControl
basic control of Mirao52e deformable mirror
OpenMicroscopy
Non-comprehensive list of projects and resources related to open microscopy.
ZebrafishFunctionalMaps_LinearRegression
Computing functional maps in zebrafish brain
ALPAO-interface
Interface to ALPAO DM-97
blink-led-python
Hello-world tutorials on hardware programming in python
ClearMap2
ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap
grbl-Mega
An open source, embedded, high performance g-code-parser and CNC milling controller written in optimized C that will run on an Arduino Mega2560
Instrumental
Python-based instrumentation library from the Mabuchi Lab.
meta
For laying organizational groundwork
micro-manager
Microscope control and image acquisition integrated with ImageJ.
opto
Python interface to Optotune focus-tunable lenses
pulse_counter
Arduino code for generating DC bias triggered by external device (e.g. camera). PCB design for adding generated DC bias to an input AO signal.
PyZWOEFW
Python library for controlling the electronic filter wheel developed by ZWO
qudi
A modular laboratory experiment management suite.
ray_tracer
basic ray tracer
spherical_aberration
Ray tracing of spherical aberration in microscopy
storm-control
Microscope control software
Teacup_Firmware
Firmware for RepRap and other 3D printers
workstation
Janelia Workstation
zebrascope_targets
Tools for two-photon ablation using Zebrascope.