microscopy-data
There are 0 repository under microscopy-data topic.
dmattek / dzPlateViewer
Deep Zoom Plate Viewer for microscopy images
Language:JavaScript 15WU-BIMAC / NBOMicroscopyMetadataSpecs
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
ElisabethKugler / ZFVascularQuantification
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
Language:ImageJ Macro 10Electron wrapped, stand-alone version of Micro-Meta App, microscopy metadata for the real world!
Language:JavaScript 7Oftatkofta / cellocity
Scientific software for analysis of confluent cell dynamics.
Language:Python 6This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
Language:JavaScript 6- GliaMorph
#GliaMorph - Toolkit to Process and Analyse MĂĽller Glia Morphology
Language:ImageJ Macro 4 - laser-scanning-microscopy
melchisedech333 / laser-scanning-microscopy
🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.
Language:PHP 4 GVS-Lab / chrometrics
Nuclear Morphology and Chromatin Organization Features
Language:Jupyter Notebook 3This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
Language:Java 3This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client
Language:JavaScript 3This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
Language:Java 2clintyr / bio-image-analysis
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
Language:Jupyter Notebook 1This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
Language:Java 1This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO
Language:Python 1- Language:MATLAB 0
arkitektio-apps / mikro-napari
napari within the mikro environment
Language:Python 0georgeglidden / relenc
convolutional-relational neural network architectures for segmentation of electron micrographs
Language:Python 0Jack-Gregory-Bioinformatics / ImageJ_Microscopy_Automation
Repository for an automated microscopy image analysis pipeline, using ImageJ.
Language:R 0sanger-matteo / Analyse-Cell-Colonization-Patterns
Quantify the colonization behaviours on surfaces for different bacterial strains
Language:Mathematica 04DN-BINA-OME-QUAREP Microscopy Glossary
Language:Python 0FabrizioMusacchio / ZARR_tests
Python code that I used in my blog posts on the Zarr file format.
Language:Pythontlnagy / Nagy_2023_SwellMigration
Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper
Language:JuliaThis repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
Language:Python
