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BigBio Stack (bigbio)

BigBio Stack

bigbio

Geek Repo

Provide big data solutions Bioinformatics

Location:Cambridge, UK

Home Page:http://bigbio.xyz

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BigBio Stack's repositories

proteomics-sample-metadata

The Proteomics Experimental Design file format: Standard for experimental design annotation

Language:PythonLicense:GPL-2.0Stargazers:74Issues:20Issues:268

quantms

Quantitative mass spectrometry workflow.

Language:NextflowLicense:MITStargazers:20Issues:7Issues:174

nf-workflows

Repository of Nextflow+BioContainers workflows

Language:NextflowLicense:GPL-2.0Stargazers:14Issues:9Issues:12

sdrf-pipelines

A repository to convert SDRF proteomics files into pipelines config files

Language:PythonLicense:Apache-2.0Stargazers:14Issues:10Issues:64

DLEAMSE

A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring

Language:PythonLicense:Apache-2.0Stargazers:10Issues:5Issues:18

pmultiqc

A library for QC report based on MultiQC framework

Language:PythonLicense:GPL-3.0Stargazers:9Issues:10Issues:48

py-pgatk

Python tools for proteogenomics analysis toolkit

Language:PythonLicense:Apache-2.0Stargazers:9Issues:6Issues:43

ibaqpy

Absolute quantification package based on MSsstats output and Quantms

Language:PythonLicense:GPL-3.0Stargazers:6Issues:2Issues:16

quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.

Language:PythonLicense:NOASSERTIONStargazers:5Issues:8Issues:21

pquant

R package for protemics downstream a analysis

Language:RLicense:GPL-3.0Stargazers:4Issues:9Issues:14

qccalculator

Development for python driven QC calculation (QCCalculator)

Language:HTMLLicense:Apache-2.0Stargazers:3Issues:10Issues:0

sparkms

Spark package to perform downstream analysis of big data proteomics

Language:PythonLicense:GPL-3.0Stargazers:3Issues:4Issues:3

pgdb

ProteomeGenomics Database Creation - Nextflow Pipeline

Language:NextflowLicense:MITStargazers:2Issues:7Issues:0

fsspark

Spark library for feature selection in multiomics using

Language:PythonLicense:Apache-2.0Stargazers:1Issues:3Issues:6

jmzTab

Version of jmzTab library

Language:JavaLicense:Apache-2.0Stargazers:1Issues:8Issues:0

pgatk-io

High performance io library for proteogenomics

Language:JavaLicense:Apache-2.0Stargazers:1Issues:4Issues:4

proma

PROMA: PROteomics Metadata Annotator

Language:HTMLLicense:BSD-3-ClauseStargazers:1Issues:5Issues:2

submission-tool-validator

A command-line tool that provide functionalities to validate files that can be submitted to PRIDE

Language:JavaLicense:Apache-2.0Stargazers:1Issues:6Issues:0

bigbio

License:GPL-3.0Stargazers:0Issues:4Issues:0

bigbio.github.io

bigbio.github.io

Language:JavaScriptLicense:MITStargazers:0Issues:3Issues:0

elastic-multiomics

Library to store ms information in elastic search.

Language:JavaStargazers:0Issues:8Issues:0

jsdrf

java library to validate SDRF file formats

Language:JavaLicense:Apache-2.0Stargazers:0Issues:7Issues:0

lucXor

JAVA-based implementation of LuciPHOr that can process any variable PTM.

Language:JavaLicense:Apache-2.0Stargazers:0Issues:3Issues:2

mad_decoy

Mad decoy is a decoy simulation tool to assess large-scale merge of q-values.

Language:PythonLicense:Apache-2.0Stargazers:0Issues:1Issues:2

msgfplus

MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.

Language:JavaLicense:NOASSERTIONStargazers:0Issues:3Issues:1

openmsrescore

OpenMS MSRescore tool, integration tool between MS2Rescore and OpenMS

License:Apache-2.0Stargazers:0Issues:0Issues:0

pia

:books: :microscope: PIA - Protein Inference Algorithms

Language:JavaLicense:NOASSERTIONStargazers:0Issues:3Issues:2

quantms.org

Web page storing all the datasets renalyzed with quantms

Language:VueLicense:MITStargazers:0Issues:9Issues:1

sage

Proteomics searching so fast it feels like magic

Language:RustLicense:MITStargazers:0Issues:1Issues:0

spectrafuse

Incremental clustesting pipeline from quantms data.

Language:PythonLicense:MITStargazers:0Issues:0Issues:0