rna-seq-quantification

There are 0 repository under rna-seq-quantification topic.

COMBINE-lab / salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
quasi-mapping bioinformatics rna-seq rnaseq salmon quantification sailfish c-plus-plus gene-expression scrna-seq single-cell 10x selective-alignment rna-seq-quantification single-cell-rna-seq transcriptome
Language:C++ 734
AlexsLemonade / scpca-nf
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
10xgenomics alevin-fry nextflow rna-seq-quantification scrna-seq cite-seq spatial-transcriptomics
Language:R 12
chi-0828 / RNA-Abundance-Quantification-on-UPMEM
Running state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system
dpu kallisto processing-in-memory rna-seq-quantification upmem
Language:C 6
chi-0828 / UpPipe
UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023
dpu genome-sequencing processing-in-memory processing-near-memory rna-seq-quantification upmem
Language:C 3

COMBINE-lab / salmon