Computational RNA Biology group

SUPPA

SUPPA: Fast quantification of splicing and differential splicing

METEORE

Automatic DNA methylation detection from nanopore tools and their consensus model

RATTLE

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

CHEUI

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

MoSEA

Motif Scan and Enrichment Analysis (MoSEA)

ORQAS

ORF Quantification pipeline for Alternative Splicing

ISOTOPE

ISOform-guided prediction of epiTOPEs in cancer

radian

Nanopore direct RNA basecaller

riser

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

reorientexpress

Transcriptome long-read orientation with Deep Learning

R2Dtool

Analyse RNA feature distributions.

ePydoor

Epitope discovery pipeline for RNA-seq

Junckey

Collection of scripts for computing PSI of junction clusters

MIRA

Mutation Identification for RNA Alterations

LatentEvents

Latent Dirichlet Allocation on alternative splicing events.

SUPPA_supplementary_data

Supplementary data

CREOLE

Reference-free identification of open reading frames and encoded proteins from nanopore transcriptomic long reads

humming

Tools for the comparison of long-read mappings to a genome reference and annotations

Splicing_Browser

Browser to present splicing events and junctions arround the genome

CHEUI-public

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

FLIPPER

Read orientation and full transcript detection from Nanopore cDNA/RNA sequencing

IG_Calculator

Set of scripts for obtaining Infomration Gain values from a set of features

SeRPeNT

SeRPeNT-analysis

calindel

tool to calculate substitutions, indels etc

risk_model_app

Shiny App to predict a risk score for infant B-ALL patients

drug_screening

ISOTOPE_supplementary

Supplementary repository for file storage

SVM-BPfinder

txannotate