microrna

There are 2 repositories under microrna topic.

• rajewsky-lab / mirdeep2

  Discovering known and novel miRNAs from small RNA sequencing data

  mirnamicrornasmallrnasequencinganalysispredictionquantificationmapping
  Language:Perl 132

• MahShaaban / miRCancerdb

  A database for microRNA-gene/protein expression correlation in cancer.

  rsqlitedatabasemicrornatcga-datacancer-genomics
  Language:R 9

• ailab-seoultech / deepTarget

  cnnsconvolutional-neural-networksdeep-learningmicrornamirna
  Language:Python 5

• mariavica / mircomb

  An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data

  rmicrornainteractionexpression
  Language:R 4

• bioinfoUQAM / mirLibSpark

  microRNA validation using Spark framework

  micrornamicrorna-target-predictionmirnasparkmicrorna-predictionplant-micrornangsngs-analysisngs-pipeline
  Language:Java 3

• gbnegrini / mirdb-custom-target-search

  This script implements a Selenium WebDriver to automate the access to miRDB - MicroRNA Target Prediction and Functional Study Database and search for microRNAs targets/seeds present in custom mRNA sequences.

  bioinformaticsmirnamicrornamirdbseedsmicrorna-targets
  Language:Python 3

• ropensci / cRegulome

  An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer

  rdatabasedatasciencecancer-genomicstcga-datatranscription-factorsmicrornarstatsr-packagepeer-reviewed
  Language:R 3

• TreesLab / circRNA_ASD

  Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism

  circrnamicrornamrnaautism
  Language:R 2

• Drmirdeep / mirdeep2_patch

  Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

  smallrnasequencingdataanalysispredictionmirnamirdeepsmallrnaquantificationmappingmicrornamirdeep2patch
  Language:Perl 1

• aritronath / iMIRAGE

  An R package to impute miRNA activity using protein-coding gene expression

  rmicrornagene-expressionimputation
  Language:R 0

• BCMSLab / cregart

  Code for the PeerJ paper (cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer)

  rcancermicrornatranscription-factorsresearch-compendium
  Language:R 0

• Bio-designer / miRNA-analysis

  miRNA-related resources

  micrornarnaepigenetics
  Language:R 0

• cyones / hextractor

  Integrated tool for hairpins extraction from RNA Sequences

  fastagenomemicrorna
  Language:R 0

• EnrightLab / bitetti_et_al_codebase

  Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"

  micrornalncrnasequencingsmallrna
  Language:HTML 0

• mariavica / mirtranslate

  Identify and translate miRNA names between different miRBase versions

  shinymicrornatranslation
  Language:R 0

• pradyumnasagar / miRPV

  miRPV is an automated tool that enables users to predict and validate microRNAs from genome/gene sequences. miRPV Features: Predict novel pre-miRNA from any given sequence Predict secondary structure stability Predict authentic pre-miRNA Predict novel mature miRNA Predict novel miRNA targets

  bioinformaticsanalysiscomputational-biologymicrorna
  Language:Perl 0

• theopavlove / paper-2023-conserved-microRNAs

  "Conserved microRNAs and Flipons Shape Gene Expression during Development by Altering Promoter Conformations" International Journal of Molecular Sciences 24, no. 5: 4884

  bioinformaticsmicrornafliponsgene-expression
  Language:Jupyter Notebook 0

• bio2bel / hmdd

  A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL

  biological-expression-languagemicrornaphenotypessystems-biology
  Language:Jupyter Notebook

• bio2bel / mirbase

  A Bio2BEL package for miRBase (http://www.mirbase.org)

  biological-expression-languagemicrornamirbasemirna
  Language:Python

• L0SG / miRNA_Project

  miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration

  micrornamicrorna-sequencemirnapythonrna-seq
  Language:Python

• MahShaaban / cRegulomedb

  Build the database file for cRegulome package

  cancer-genomicsdatabasesdatasciencemicrornartcga-datatranscription-factors
  Language:R

• MahShaaban / sqlome

  Build SQLite tables of microRNAs and Transcription Factors-gene Correlations

  micrornarsqlite-databasetranscription-factors
  Language:R

• seb-mueller / small-RNA_SWR1

  Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)

  bioinformaticsrarabidopsispublication-codemicrornaepigenetics