proteome

There are 1 repository under proteome topic.

ropensci / biomartr
Genomic Data Retrieval with R
r genome-retrieval biomart database-retrieval ncbi-genbank genomics ensembl-servers sequenced-genomes proteome genome genome-annotation metagenomics meta-analysis rstats r-package peer-reviewed
Language:R 206
smith-chem-wisc / MetaMorpheus
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
ptm database-search proteome uniprot mass-match spectra calibration proteomics-database-search discovery
Language:C# 87
drostlab / orthologr
Genome wide orthology inference and dNdS estimation
blast-searches orthology-inference comparative-genomics-studies genomics sequence-alignments blast comparative dnds-estimation codon-alignment r entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Language:R 84
tubanlee / MD
Matrix dissimilarity from the differences of Moments and sparsity
dissimilarity dissimilarity-matrix dissimilarity-measures genome genomics matrix metabolome microbiome microbiomics omics omics-analysis omics-data-analysis proteome proteomics
Language:R 38
symbioticMe / proBatch
Tools for Batch Effects Diagnostics and Correction
batch-effects proteome normalization
Language:R 14
smith-chem-wisc / ProteoformSuite
Construction, quantification, and visualization of proteoform families
visualization quantification proteome cytoscape proteoform proteoform-families ptm
Language:C# 11
ChongLC / MinimalSetofViralPeptidome-UNIQmin
An alignment-independent tool for the study of pathogen sequence diversity
alignment-independent sequence-diversity pathogen python3 virus proteome minimal-set
Language:Python 6
ifremer-bioinformatics / orson
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
workflow annotation transcriptome proteome nextflow-pipelines
Language:Nextflow 5
PalMuc / triangulation
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
phylogeny revbayes orthology homology-search proteome genomes genomes-comparison full-genome bash-script
Language:R 4
ChongLC / UNIQmin_PublicationData
This repository is to store the used dataset for publications related to UNIQmin
uniqmin data-release virus proteome protein-sequences
0
Guangyou / rOMICS
r omics proteome systems-biology
0
louis-pare / TPBA
Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.
blast proteome snakemake transcriptome
Language:Python 0
lucasragr / Phosphosite_localization
It assigns the phosphorylation site in protein
glycoproteomics mass-spectrometry phosphoproteomics proteome ptm-identification ptmomics
Language:R 0
Pathmanaban / Biological-data
Sharing some useful biological data that I generated during my PhD.
bioinformatics human-data python proteome
0
Pathmanaban / Phospho_analysis
Scripts used for the phosho data analysis
protein-structure ptms phosphorylation biophysics bioinformatics human proteome functional-domain mutations python
Language:Jupyter Notebook 0
SimranBansal98 / UniqueRepeats_BacterialProteome
proteome bacteria bacterial-database
Language:Python 0
SARS-CoV-2
tyronechen / SARS-CoV-2
This is now the main repository. A few older issues are still tracked on gitlab for reference.
machine-learning covid-19 sars-cov-2 multi-omics data-integration proteome translatome
Language:Jupyter Notebook 0
workflow-development-interest-group / fragpipe-proteomics-pipeline-tutorial
CWL descriptions for FragPipe Proteomics Pipline
proteomics fragpipe fragpipe-proteomics-pipeline quantification tmt-integrator proteome
Language:Common Workflow Language 0