bio-formats

There are 2 repositories under bio-formats topic.

• ome / bioformats

  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  bio-formatsformat-converterformat-readerimagejavalife-sciences-imagelightsheetmetadatawhole-slide-imagingwsi
  Language:Java 362
• diplib

  DIPlib / diplib

  Quantitative Image Analysis in C++, MATLAB and Python

  quantitative-image-analysisimage-analysisimage-processingmathematical-morphologyfilteringquantificationimage-viewercppcpp14matlabpythonpython3bio-formatsdipimagediplib
  Language:C++ 206

• AllenCellModeling / aicsimageio

  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

  pythonimageiomicroscopybio-formatsimage-metadatascientific-computingscientific-formatsxarraydask
  Language:Python 192
• RBioFormats

  aoles / RBioFormats

  :books: R interface to the Bio-Formats library

  rimage-processingbio-formatsbioconductor
  Language:R 23

• ome / bio-formats-examples

  Examples of usage of the Bio-Formats API

  bio-formatsgradlemavenexamplesapi
  Language:Java 14

• WolframResearch / BioFormatsLink

  Package for interacting with Bio-Formats library in the Wolfram Language

  bio-formatsjavajlinklibrarymathematicamicroscopywolfram-language
  Language:Mathematica 14

• darwinjob / pyramidio-bioformats

  Image pyramid reader and writer enhanced with bio-formats library reader

  bio-formatsdeepzoomimage-processingjavaopenseadragonpyramidio
  Language:Java 13

• BiologyTools / BioGTK

  A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

  bio-formatsbiologygtkimage-stacksimagejmicroscopyroicross-platformomeroimagej-roiimagej-tiffwhole-slide-imagesegment-anythingsegment-anything-modelopenslidepluginsgeojsonqupath
  Language:C# 8

• ome / bio-formats-documentation

  Bio-Formats documentation

  bio-formatsdocumentation
  Language:Java 8

• BiologyTools / Bio

  A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

  biologymicroscopycsvimagejroiomeomerobio-formatswhole-slide-image
  Language:C# 4

• christianrickert / CU-CellSeg

  Cell segmentation of multi-channel images

  imagej2macrocell-segmentationionpathakoya-biosciencesnucleicytoplasmmembranecell-matrixmulti-channelbatchcellspixel-classifierbio-formatstrainable-weka-segmentationihcimmunohistochemistrymibiscopevectrapolaris
  Language:ImageJ Macro 4

• spacetx / spacetx-writer

  Convert supported filesets to the SpaceTx format

  human-cell-atlasomebio-formatsfile-formatsconversiontranscriptomicsimaging
  Language:Java 3

• BiologyTools / BioCore

  Bio Library in .NET6. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

  bio-formatsbiologycsvimagejmicroscopyomeroiwhole-slide-imageimagej-roi
  Language:C# 2

• ome / bio-formats-jace

  Bio-Formats JACE C++ bindings

  bio-formatsjavajace
  Language:C++ 2

• ome / ecdp2019-publication

  Supplementary information associated with Besson et al. (2019) ECDP 2019

  ome-tiffdigital-pathologywhole-slide-imagingproceedingssupplemental-materialsdockerbio-formatsomeroqupath
  Language:Python 2

• tusharrp / card

  This is a webpage where gamers All information is designed in one card with animation.

  bio-formatsself-introductiongamerbiogamers-protofiloprotofilocard-hovercard-hover-overlaycard-game
  Language:CSS 2

• christianrickert / CU-IScore

  IHC scoring of multi-channel images

  imagej2macroscoringionpathakoya-biosciencesmulti-channelbatchbio-formatsdabhematoxylinstainingimmunofluorescenceihcimmunohistochemistrymibiscopevectrapolaris
  Language:ImageJ Macro 1

• ome / bio-formats-build

  Bio-Formats top-level build for all components

  bio-formatsbuildmeta-repo
  Language:Shell 1

• ome / bio-formats-fiji

  A simple POM to update Bio-Formats on a Fiji distribution

  bio-formatsfiji
  Language:Shell 1

• ome / bio-formats-octave-docker

  Bio-Formats Octave container based on openmicroscopy/octave

  bio-formatsdockeroctave
  Language:MATLAB 1

• labsyspharm / bftools-docker

  BioFormats Tools Docker Image

  dockerbio-formatstools

• microscopepony / bio-formats-bundles

  **Experimental** Distribution bundles for bio-formats releases

  bio-formats
  Language:Shell

• microscopepony / bio-formats-imagej

  **Experimental** Bio-Formats ImageJ plugin for image import and export

  bio-formats
  Language:Java

• microscopepony / bio-formats-test

  **Experimental** Bio-Formats integration tests

  bio-formats
  Language:Java

• ome / ome-files-performance

  A repository for benchmark testing of OME Files

  ome-filesbio-formatsbenchmarkreadingwritingmetadatapixeldata
  Language:Java

• ome / ome-release

  Scripts for OME releases (deprecated)

  htmltemplateomerobio-formats
  Language:HTML

• sbesson / bio-formats-fiji

  A simple POM to update Bio-Formats on a Fiji distribution

  bio-formatsfiji
  Language:Shell

• sbesson / bio-formats-octave-docker

  Bio-Formats Octave container based on openmicroscopy/octave

  dockerbio-formatsoctave
  Language:MATLAB