Giters
Theis Lab (theislab)

Theis Lab

theislab

Organization data from Github https://github.com/theislab

Institute of Computational Biology

Location:Munich

Home Page:https://www.helmholtz-muenchen.de/icb/

GitHub:@theislab

Theis Lab's repositories

single-cell-best-practices

https://www.sc-best-practices.org

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:1008Issues:17Issues:211

cellrank

CellRank: dynamics from multi-view single-cell data

Language:PythonLicense:BSD-3-ClauseStargazers:393Issues:8Issues:746

ehrapy

Electronic Health Record Analysis with Python.

Language:PythonLicense:Apache-2.0Stargazers:283Issues:4Issues:345

zellkonverter

Conversion between scRNA-seq objects

Language:RLicense:NOASSERTIONStargazers:184Issues:5Issues:104

moscot

Multi-omic single-cell optimal transport tools

Language:PythonLicense:BSD-3-ClauseStargazers:150Issues:3Issues:374

anndata2ri

Convert between AnnData and SingleCellExperiment

Language:PythonLicense:GPL-3.0Stargazers:139Issues:7Issues:87

DRVI

Unsupervised Deep Disentangled Representation of Single-Cell Omics

Language:PythonLicense:BSD-3-ClauseStargazers:39Issues:1Issues:5

prophet

Language:PythonLicense:MITStargazers:30Issues:3Issues:5

multigrate

Multigrate: multiomic data integration for single-cell genomics

Language:PythonLicense:BSD-3-ClauseStargazers:20Issues:1Issues:12

CellFlow

Modeling complex perturbations with CellFlow

Language:PythonLicense:NOASSERTIONStargazers:12Issues:0Issues:0

CFGen

Language:Jupyter NotebookLicense:MITStargazers:12Issues:1Issues:2

cross_system_integration

Language:Jupyter NotebookStargazers:12Issues:2Issues:11

scanpydoc

Collection of Sphinx extensions similar to (but more flexible than) numpydoc

Language:PythonLicense:GPL-3.0Stargazers:12Issues:5Issues:37

ehrapy-tutorials

Tutorials for ehrapy

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:9Issues:2Issues:9

moscot_notebooks

Analysis notebooks using the moscot package

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:8Issues:1Issues:21

ehrdata

A datastructure for EHR data

Language:PythonLicense:Apache-2.0Stargazers:5Issues:2Issues:37

archmap

Language:JavaScriptLicense:MITStargazers:4Issues:2Issues:43

gh-dashboard

A dashboard of everything in the theislab GitHub repository

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multigrate_reproducibility

Reproducing results from Multigrate paper

Language:Jupyter NotebookStargazers:3Issues:1Issues:9

pertpy-reproducibility

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:3Issues:2Issues:6

spatialdata-db

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:3Issues:1Issues:26

deconvATAC

Spatial transcriptomics deconvolution methods generalize well to spatial chromatin accessibility data

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:2Issues:1Issues:0

tissue

Language:PythonLicense:MITStargazers:2Issues:3Issues:0

archmap_data

Language:PythonStargazers:1Issues:0Issues:1

devVI

Integration of developmental scRNA-seq data

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

cellflow_reproducibility

Reproducibility repository for CellFlow

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cellflow_reproducibility_private_backup

Private backup reproducibility repository for CellFlow with all branches

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cellrank_protocol

Repository accompanying CellRank's Nature Protocols article.

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:0Issues:0Issues:0

mapqc

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

spatial_scooby

spatial_scooby: Modeling spatial transcriptomics from DNA sequence at single-cell resolution.

License:MITStargazers:0Issues:0Issues:0