Beast code in Giters

NCBI - National Center for Biotechnology Information/NLM/NIH's repositories

sra-tools

SRA Tools

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datasets

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

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pgap

NCBI Prokaryotic Genome Annotation Pipeline

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amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

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icn3d

web-based protein structure viewer and analysis tool interactively or in batch mode

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TPMCalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

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MedCPT

Code for MedCPT, a model for zero-shot biomedical information retrieval.

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vadr

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

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fcs

Foreign Contamination Screening caller scripts and documentation

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clinvar

ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.

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rapt

Read Assembly and Annotation Pipeline Tool

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ncbi-cxx-toolkit-public

NCBI C++ Toolkit package sources

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OSIRIS is a public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific protocols. OSIRIS evaluates the raw electrophoresis data contained in .fsa or .hid files using an independently derived mathematically-based sizing algorithm. OSIRIS currently supports ABI capillary analytical platforms and numerous commercially available marker kits including all CODIS-compliant kits as well as those favored by biomedical laboratories.

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