protein-protein-interactions

There are 1 repository under protein-protein-interactions topic.

DeepRank / Deeprank-GNN
Graph Network for protein-protein interface
graph protein graph-networks interface-classification protein-protein-interactions pssm scoring utrecht-university
Language:Python 115
DeepInteract
BioinfoMachineLearning / DeepInteract
A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)
bioinformatics deep-learning docker geometric-deep-learning graph-neural-networks machine-learning protein-protein-interactions proteins transformers
Language:Python 57
anton-bushuiev / PPIformer
Learning to design protein-protein interactions with enhanced generalization (ICLR24)
equivariant-representations machine-learning protein-design protein-protein-interactions proteins
Language:Jupyter Notebook 37
Bhattacharya-Lab / EquiPPIS
E(3) equivariant graph neural network for PPI site prediction
deep-learning equivariance neural-network protein-protein-interactions
Language:Python 7
marcottelab / super.complex_website_humap
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM
community-detection protein-complexes protein-complex-identification supervised-machine-learning protein-protein-interaction-network protein-protein-interactions
Language:HTML 2
neksa / interactome
Structural Interactome pipeline
ppi protein-protein-interactions structural-bioinformatics structural-biology
Language:JavaScript 1
Emad-COMBINE-lab / intrepppid
Incorporating Triplet Error for Predicting PPIs using Deep Learning
computational-biology cross-species deep-learning protein-protein-interaction protein-protein-interactions
Language:Python 0
Emad-COMBINE-lab / ppi_origami
Tools for processing and analysing PPI datasets
protein-protein-interaction protein-protein-interactions
Language:Python 0
bio2bel / hippie
Convert PPIs in HIPPIE to BEL
biological-expression-language protein-protein-interactions
Language:Python
Ilia-Abolhasani / co-worker-proteins-in-gene-ontology
Analyzing biological networks using statistical testing to uncover significant differences in protein distributions based on functional relationships.
null-hypothesis protein-protein-interactions statistical-testing
Language:Jupyter Notebook
marcottelab / RL_humap_prediction
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL
community-detection protein-complex-identification protein-complexes protein-protein-interaction-network protein-protein-interactions reinforcement-learning
Language:HTML