foldseek

There are 1 repository under foldseek topic.

westlake-repl / SaProt
Saprot: Protein Language Model with Structural Alphabet
alphafold2 foldseek predicted-structures pretraining protein protein-language-model protein-sequence protein-structure representation-learning structure-aware protein-llm structural-alphbet
Language:Python 246
soedinglab / MMseqs2-App
MMseqs2 app to run on your workstation or servers
sequence-search electron vue golang docker docker-compose profile-search bioinformatics mmseqs foldseek structure-search alphafold2 colabfold
Language:Vue 51
althonos / mini3di
A NumPy port of the foldseek code for encoding protein structures to 3di.
foldseek numpy-library protein-structure python-library
Language:Python 15
cvigilv / ResidueFisher
Bioinformatics protocol that aims at mining information at the sequence and structure level of protein chain to detect possible evolutionary conserved residues.
bioinformatics-analysis bioinformatics-pipeline biology foldseek structural-bioin structural-biology
Language:Python 4
xnought / protein-scatter
Visualizing 3D fragments of proteins in a scatterplot using Foldseek's 3Di and Transformers.
foldseek protein transformer umap
Language:Jupyter Notebook 1