mdshw5

pyfaidx

Efficient pythonic random access to fasta subsequences

fastqp

Simple FASTQ quality assessment using Python

simplesam

Simple pure Python SAM parser and objects for working with SAM records

hamstring

Tools for generating and decoding error-correcting DNA barcodes

transcoorder

Convert SAM/BAM files with transcript coordinates to SAM files with genomic coordinates

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

mattshirley.com

mpmd

Configuration and such for my Monoprice mini delta printer

nuvinci-spare-parts

Spare parts for NuVinci CVP hubs

acidbio

AlignmentProcessor

Prepares CDS fasta Alignments for use with several programs

batmon-ha

Add-on for Home Assistant to connect JK, JBD and Daly BMS via Bluetooth

bioconda-recipes

Conda recipes for the bioconda channel.

cnvkit

Copy number variant detection from targeted DNA sequencing

flask-bootstrapped-template

A template for building visualisation and analysis apps of RNA-seq data in Flask

FreePSI

An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome

freqgen

Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

home-assistant-addons

homebridge-camera-ffmpeg-ufv

UniFi Video plugin for Homebridge

klipper

Klipper is a 3d-printer firmware

kma

Keep Me Around: Intron Retention Detection

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

node-red-contrib-victron

Novartis.github.io

Public gallery of NIBR Open Source projects

ortlieb-spare-parts

3D-printable spare parts for Ortlieb bags

posts

blog posts for mattshirley.com

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

squiggle

📈 DNA Sequence Visualization for Humans

venusos_starlink

Code for adding control over Starlink POE to VenusOS using ESP32 relay board and Node-RED