DeepRank

deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

Deeprank-GNN

Graph Network for protein-protein interface

deeprank2

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

iScore

iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

pdb2sql

Fast and versatile biomolecular structure PDB file parser using SQL queries

DeepRank-GNN-esm

Graph Network for protein-protein interface including language model features

PSSMGen

Generates consistent PSSM and/or PDB files for protein-protein complexes

PoNDeR

PointNet for Deep Rank: protein-protein interaction scoring using neural networks

h5xplorer

A customizable HDF5 browser with iPython console embbeded

DeepXplorer

Data browser for HDF5 files generated by DeepRank

pdbprep

preprocess PDB files for deeprankcore

3D-Vac

Personalized cancer vaccine design through 3D modelling boosted geometric learning.

DeepRank-Mut

Deep learning framework to predict functional effects of missense variants in human

pdb2sql_benchmark

graphRank

graph approach of ranking

haddock-tools

Set of useful HADDOCK utility scripts

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

scrapePDB

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks